Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0024_RS00960 Genome accession   NZ_CP139994
Coordinates   219848..221386 (+) Length   512 a.a.
NCBI ID   WP_326999374.1    Uniprot ID   -
Organism   Comamonas testosteroni strain HAMBI_0403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214848..226386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0024_RS00940 (U0024_00940) - 215582..216910 (-) 1329 WP_304351510.1 sulfatase -
  U0024_RS00945 (U0024_00945) - 217024..218016 (-) 993 WP_302092834.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  U0024_RS00950 (U0024_00950) - 218151..219122 (-) 972 WP_304351511.1 tripartite tricarboxylate transporter substrate binding protein -
  U0024_RS00955 (U0024_00955) - 219215..219763 (+) 549 WP_304351512.1 MarR family winged helix-turn-helix transcriptional regulator -
  U0024_RS00960 (U0024_00960) comM 219848..221386 (+) 1539 WP_326999374.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0024_RS00965 (U0024_00965) - 221400..222329 (-) 930 WP_304352002.1 LysR substrate-binding domain-containing protein -
  U0024_RS00970 (U0024_00970) - 222439..223617 (+) 1179 WP_304352001.1 YbfB/YjiJ family MFS transporter -
  U0024_RS00975 (U0024_00975) - 223651..224718 (+) 1068 WP_304352000.1 NAD(P)H-dependent flavin oxidoreductase -
  U0024_RS00980 (U0024_00980) - 224770..226053 (-) 1284 WP_326999581.1 CaiB/BaiF CoA-transferase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54759.65 Da        Isoelectric Point: 7.3501

>NTDB_id=912298 U0024_RS00960 WP_326999374.1 219848..221386(+) (comM) [Comamonas testosteroni strain HAMBI_0403]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDSTLSEQGDGVEGWQRVHSRPAEASLPSLDLREVRGQIQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSVALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGYWGSRVRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGQSSAAVQQRVSAARDKALQRQGLPNHQLQGVQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDAITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=912298 U0024_RS00960 WP_326999374.1 219848..221386(+) (comM) [Comamonas testosteroni strain HAMBI_0403]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCCCTGCTGGGCCTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACGCTGGTGGGCCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCGGCCATCG
TCAATGCGGGGCTGGAGTTCCCGAACAACCAGCGCATCACTGTCAACCTGGCTCCGGCAGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGAATTCTGGCGGCCAGCGGGCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCCCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACGGCGCTGGCCCTGCAGCGTCAGC
AACAGCGCGTGCGCCTGGTGCTGCCGCCGGACAGTGCGCTGGAGGCCGCTTTCGTGCCGGCAATCGAAGTCTTCGGCGCT
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACAGCACCCTGTCGGAGCAGGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCCTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATTCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCGCATGGTGTGCTGATGATCGGCCCTCCGGGTTCGGGAAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCCGGCATGACCGATGAGGAAGCGCTCGAAGCCGCAGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGTTGTGGCGCCAGCGGCCGTTTGCCGCTCCCCATCACACGGCCAGCTCCGTCGCGCTGGTCGGCG
GCGGCTCTCCGCCCCGGCCTGGCGAAATCTCCTATGCCCATTGCGGGGCGCTTTTTCTGGACGAGCTGCCCGAGTTCGCG
CGCAGTGCCCTGGAGGCCTTGCGCGAGCCGCTGGAGACCGGTCGCATCACCATCGTGCGGGCTGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGTTGGTGGCAGCCATGAACCCCTGCCCCTGCGGCTACTGGGGCTCGCGCGTCAGGGCCTGCCGCT
GCTCGCCTGATCAGGTGGCACGTTATCAGGCGCGCATCAGCGGGCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAACTTCTGGCAGCGCCCGAAGGGCAGAGCAGCGCGGCCGTGCAGCAACGCGTGAGTGCAGC
CAGAGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGCGTGCAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCGCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCACGCGGCACGCACCGGGCCTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATGCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
CGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.941

99.609

0.527
  comM Vibrio campbellii strain DS40M4

51.176

99.609

0.51
  comM Haemophilus influenzae Rd KW20

50.787

99.219

0.504
  comM Glaesserella parasuis strain SC1401

49.511

99.805

0.494
  comM Legionella pneumophila str. Paris

47.692

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.692

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

99.609

0.434