Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0008_RS00670 Genome accession   NZ_CP139992
Coordinates   139922..141448 (-) Length   508 a.a.
NCBI ID   WP_043490171.1    Uniprot ID   A0A377PD10
Organism   Hafnia alvei strain HAMBI_1279     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 134922..146448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0008_RS00660 (U0008_00660) hdfR 138586..139434 (-) 849 WP_051874053.1 HTH-type transcriptional regulator HdfR -
  U0008_RS00665 (U0008_00665) - 139557..139895 (+) 339 WP_025802063.1 DUF413 domain-containing protein -
  U0008_RS00670 (U0008_00670) comM 139922..141448 (-) 1527 WP_043490171.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0008_RS00675 (U0008_00675) - 141788..143017 (+) 1230 WP_043490176.1 MFS transporter -
  U0008_RS00680 (U0008_00680) ilvL 143151..143249 (+) 99 WP_071778685.1 ilv operon leader peptide -
  U0008_RS00685 (U0008_00685) ilvG 143390..145036 (+) 1647 WP_043490178.1 acetolactate synthase 2 catalytic subunit -
  U0008_RS00690 (U0008_00690) ilvM 145033..145308 (+) 276 WP_080723891.1 acetolactate synthase 2 small subunit -
  U0008_RS00695 (U0008_00695) - 145381..146313 (+) 933 WP_025802071.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54884.22 Da        Isoelectric Point: 7.8238

>NTDB_id=912277 U0008_RS00670 WP_043490171.1 139922..141448(-) (comM) [Hafnia alvei strain HAMBI_1279]
MSVAMINTRAAIGVQAPAVSVEAHISTGLPGFTLVGLPEATVKEAKDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILIASEQLSATSVEGLELLGELGLSGALRRIQGAIPAAMAAQHHQRKLIAPEENEEELGLLGEQQPHLIANH
LLQVCDYLSGESPLLPPKVSQLSSQSPNTKDMRDIIGQEQARRALEIAATGGHNLLLLGPPGTGKTMLASRLNSILPPLT
TEEALESAAVASLVHQSTTGQSCYQRPFRTPHHSASMAALIGGGSLPRPGEISLAHNGVLFLDELPEFERRVLDALREPL
ESGEACISRALAKVTFPARVQLVAAMNPSPTGHYKGIHARTPPQQILKYLSRLSGPFLDRFDLSIEVPLLPAGVLSIQKR
VGESSEVIRQRVCLAREKQYQRSGKLNAHLAGKEMDRVCSLSQEDAAFLEQALEKMGLSVRAWHRILKVARSIADLAQSD
NISRIHIAEALSYRSMDRLIQHLHQALQ

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=912277 U0008_RS00670 WP_043490171.1 139922..141448(-) (comM) [Hafnia alvei strain HAMBI_1279]
ATGTCAGTGGCGATGATTAATACCCGTGCAGCAATCGGCGTGCAGGCACCCGCCGTGAGCGTTGAAGCACACATCAGTAC
CGGACTTCCCGGTTTTACATTAGTAGGTTTGCCTGAGGCGACCGTGAAAGAGGCTAAAGACCGCGTAAGAAGCGCCATCA
TAAATTGCGGTTTTACTTTCCCGGCAAAACGTATCACGGTGAATTTGGCTCCCGCAGATCTTCCCAAAGAGGGCGGTCGC
TACGATCTTCCCATTGCAATCGCCATTTTGATTGCTTCTGAGCAGCTTAGCGCGACTTCTGTGGAAGGATTAGAGTTACT
CGGTGAATTGGGCCTTTCAGGCGCACTACGGCGCATTCAGGGCGCTATACCAGCAGCTATGGCCGCACAGCATCATCAGC
GTAAATTAATCGCACCAGAGGAAAATGAGGAAGAGCTTGGCCTGCTTGGAGAACAACAGCCCCATCTCATTGCCAATCAT
CTTCTTCAGGTTTGTGATTATCTCAGCGGTGAATCACCGCTTCTACCACCGAAGGTCTCTCAGCTATCCTCCCAATCTCC
CAACACAAAGGATATGCGGGATATTATTGGCCAAGAACAGGCACGAAGAGCTTTAGAAATCGCCGCCACAGGCGGCCACA
ACTTATTGTTATTGGGGCCACCCGGCACAGGGAAAACTATGTTAGCCAGCCGCCTTAATAGCATATTGCCACCGTTAACC
ACCGAAGAGGCTTTAGAGAGTGCGGCGGTCGCTAGTTTGGTACATCAATCAACCACGGGGCAATCTTGTTACCAGCGGCC
ATTTAGAACCCCACATCACAGTGCTTCAATGGCAGCACTCATTGGAGGTGGGTCTTTGCCAAGACCCGGAGAGATTTCTC
TGGCACATAACGGGGTATTATTTTTGGATGAACTGCCCGAGTTTGAACGGCGAGTGTTGGATGCTCTGCGCGAACCGCTT
GAGTCTGGCGAAGCATGTATTTCTAGGGCACTGGCAAAAGTCACTTTCCCTGCAAGGGTACAATTAGTTGCTGCTATGAA
TCCAAGTCCGACAGGACATTACAAAGGCATTCATGCTCGTACACCACCACAGCAGATACTCAAATATCTATCCCGCTTAT
CAGGCCCATTTTTAGATCGTTTTGACCTCTCTATTGAAGTGCCATTGTTACCCGCAGGCGTTCTTAGCATTCAAAAACGC
GTTGGAGAAAGCAGCGAGGTTATTCGCCAACGAGTCTGTTTAGCACGAGAAAAACAGTATCAACGATCGGGAAAGCTCAA
CGCACACTTGGCAGGCAAAGAGATGGATAGGGTATGCTCACTATCTCAAGAAGATGCGGCATTTCTGGAACAAGCGCTAG
AGAAGATGGGATTATCGGTTAGGGCTTGGCATCGAATACTAAAAGTTGCTCGTTCTATTGCAGATCTTGCACAAAGTGAC
AACATCAGCCGAATTCATATTGCAGAGGCACTCAGCTATCGCTCAATGGATCGTTTAATCCAACATCTCCATCAGGCACT
GCAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377PD10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.612
  comM Glaesserella parasuis strain SC1401

60.98

100

0.612
  comM Vibrio cholerae strain A1552

60.835

99.016

0.602
  comM Vibrio campbellii strain DS40M4

60.277

99.606

0.6
  comM Legionella pneumophila str. Paris

48.134

100

0.482
  comM Legionella pneumophila strain ERS1305867

48.134

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.68

97.835

0.457