Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0004_RS04535 Genome accession   NZ_CP139976
Coordinates   1015926..1017446 (-) Length   506 a.a.
NCBI ID   WP_070254363.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain HAMBI_1919     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010926..1022446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0004_RS04525 (U0004_04525) - 1014792..1015136 (-) 345 WP_034749443.1 DUF1840 domain-containing protein -
  U0004_RS04530 (U0004_04530) - 1015317..1015862 (-) 546 WP_070254364.1 hypothetical protein -
  U0004_RS04535 (U0004_04535) comM 1015926..1017446 (-) 1521 WP_070254363.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0004_RS04540 (U0004_04540) - 1017557..1017805 (-) 249 WP_034749434.1 accessory factor UbiK family protein -
  U0004_RS04545 (U0004_04545) - 1018076..1018843 (+) 768 WP_070254362.1 TorF family putative porin -
  U0004_RS04550 (U0004_04550) - 1018855..1019193 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  U0004_RS04555 (U0004_04555) - 1019205..1020740 (+) 1536 WP_034784678.1 ammonium transporter -
  U0004_RS04560 (U0004_04560) gshA 1020945..1022243 (+) 1299 WP_070254361.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54599.60 Da        Isoelectric Point: 8.5064

>NTDB_id=912183 U0004_RS04535 WP_070254363.1 1015926..1017446(-) (comM) [Janthinobacterium lividum strain HAMBI_1919]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRNQSGAPRAFILPQANADEAALVGDACIYP
AHSLLEVCAHFAAHASQNALQRHQPVLVAHAFPYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGGHFKVEHWKRRPYRSPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHNRLSGPLLDRIDLQIEVAAMPPAA
LGRQAGAGECTQRIATRVAAAYALQLARQGKSNQQLSNTEIEQHCRLEKHGEQLLHGAMTRLHWSARTYHRVLRVARSIA
DLAGSPAIVQPHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=912183 U0004_RS04535 WP_070254363.1 1015926..1017446(-) (comM) [Janthinobacterium lividum strain HAMBI_1919]
ATGAGCCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
CGGCTTGCCTTCGTTTACGATTGTCGGCTTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGTGTTCGTGCCGCGTTGC
AAAACTGCGGCTTTGAAATGCCGGCGCGGCGCATCACGGCCAATCTGGCACCAGCGGACTTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCCATTGCACTGGGCATCCTGGCCGCCTCCGGCCAGTTGCCGGGCGATCAATTACATCACTATGAATTCGC
GGGCGAACTGTCGCTCTCAGGCCAGTTGCGCCCCATCCGCGGCGCCCTGGCCATGACCTTTGCCATGCAGCGCAACCAGT
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCAAACGCGGACGAGGCCGCTCTCGTCGGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCGCGCACGCCAGCCAGAACGCCCTGCAACGCCACCAGCCCGTGCT
GGTAGCGCACGCTTTTCCGTATCCCGACTTTGCCGACGTGCAGGGGCAGCAGCAGGCGCGGCGGGCACTGGAAGTGGCGG
CAGCGGGCGGTCACAACGTCTTGATGGTGGGGCCGCCAGGCGCAGGCAAGACCATGCTGGCCAGCCGCTTTCCCGGCGTG
CTGCCGCCCATGAGCGATGAAGAAGCGCTGGAATCGGCTGCCGTGCATTCGCTGGGCGGCCACTTCAAGGTGGAACACTG
GAAACGGCGGCCCTATCGCTCCCCGCACCAGACAGCATCCGGCGTGGCACTGGTGGGTGGCGGCAACGTACCGCGCCCGG
GAGAAATCTCGCTGGCCCACTGCGGCGTGCTGTTTCTCGATGAAATTGCCGAATTCCAGCGCCGGGTACTCGATGTGCTG
CGTCAGCCCATGGAATCGGGCGTGATCAGCATTTCACGCGCGGCCCGCCAGGCCGAGTTTCCTGCCCGCTTTCAACTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTATCTGGGGCACGCTTCCGGCCGCTGCCGCTGCACGCCAGACGCCGTGCTGC
GCTATCACAATCGCCTGTCCGGCCCGCTGCTCGACCGTATCGACCTGCAGATTGAAGTGGCCGCCATGCCGCCGGCCGCG
CTGGGCCGGCAGGCCGGTGCCGGAGAATGCACGCAGCGGATCGCCACGCGGGTAGCGGCAGCCTATGCCTTGCAGCTGGC
GCGCCAGGGAAAATCGAACCAGCAGCTGAGCAACACGGAAATCGAGCAGCATTGTCGCCTTGAAAAGCATGGCGAACAGT
TGCTGCATGGCGCCATGACGCGTCTGCACTGGTCCGCGCGCACCTATCACCGGGTACTGCGCGTGGCGCGCAGCATCGCG
GACCTGGCGGGCAGCCCGGCCATCGTGCAGCCACATGTTGCCGAAGCGATCCAGTACCGGCGCGTACTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.403

100

0.549
  comM Glaesserella parasuis strain SC1401

53.346

100

0.536
  comM Vibrio cholerae strain A1552

52.941

100

0.534
  comM Haemophilus influenzae Rd KW20

50.588

100

0.51
  comM Legionella pneumophila str. Paris

48.337

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.337

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449