Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0022_RS00655 Genome accession   NZ_CP139974
Coordinates   141006..142523 (-) Length   505 a.a.
NCBI ID   WP_042016430.1    Uniprot ID   -
Organism   Aeromonas caviae strain HAMBI_1972     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 136006..147523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0022_RS00630 (U0022_00630) - 137151..137786 (-) 636 WP_042016427.1 nicotinamidase -
  U0022_RS00635 (U0022_00635) - 137861..138511 (+) 651 WP_029314880.1 NUDIX hydrolase -
  U0022_RS00640 (U0022_00640) - 138588..139076 (+) 489 WP_042016428.1 DUF523 domain-containing protein -
  U0022_RS00645 (U0022_00645) - 139019..139966 (-) 948 WP_042016429.1 acyltransferase -
  U0022_RS00650 (U0022_00650) - 139974..140873 (-) 900 WP_039039683.1 acyltransferase -
  U0022_RS00655 (U0022_00655) comM 141006..142523 (-) 1518 WP_042016430.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0022_RS00660 (U0022_00660) ilvG 142908..144554 (+) 1647 WP_042016431.1 acetolactate synthase 2 catalytic subunit -
  U0022_RS00665 (U0022_00665) ilvM 144551..144808 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  U0022_RS00670 (U0022_00670) - 144821..145765 (+) 945 WP_039039680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54686.63 Da        Isoelectric Point: 7.4701

>NTDB_id=912140 U0022_RS00655 WP_042016430.1 141006..142523(-) (comM) [Aeromonas caviae strain HAMBI_1972]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAEILPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=912140 U0022_RS00655 WP_042016430.1 141006..142523(-) (comM) [Aeromonas caviae strain HAMBI_1972]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCAATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGATCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTAAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGACCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAATAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGATAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.944

99.406

0.636
  comM Haemophilus influenzae Rd KW20

61.569

100

0.622
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.433

100

0.608
  comM Legionella pneumophila str. Paris

51.411

98.218

0.505
  comM Legionella pneumophila strain ERS1305867

51.411

98.218

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.776

100

0.461