Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0034_RS11855 Genome accession   NZ_CP139970
Coordinates   2637738..2639294 (-) Length   518 a.a.
NCBI ID   WP_085227802.1    Uniprot ID   A0A1X7EPT7
Organism   Trinickia caryophylli strain HAMBI_2159     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2632738..2644294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0034_RS11840 (U0034_11830) - 2633340..2634194 (+) 855 WP_085227799.1 xanthine dehydrogenase family protein subunit M -
  U0034_RS11845 (U0034_11835) - 2634175..2637006 (+) 2832 WP_085227800.1 molybdopterin cofactor-binding domain-containing protein -
  U0034_RS11850 (U0034_11840) - 2637148..2637534 (-) 387 WP_085227801.1 BON domain-containing protein -
  U0034_RS11855 (U0034_11845) comM 2637738..2639294 (-) 1557 WP_085227802.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0034_RS11860 (U0034_11850) - 2639618..2640850 (+) 1233 WP_244142496.1 RpiR family transcriptional regulator -
  U0034_RS11865 (U0034_11855) - 2640847..2641680 (+) 834 WP_085227804.1 GSU2403 family nucleotidyltransferase fold protein -
  U0034_RS11870 (U0034_11860) - 2641922..2642176 (-) 255 WP_085228100.1 accessory factor UbiK family protein -
  U0034_RS11875 (U0034_11865) - 2642555..2642893 (+) 339 WP_020566534.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 54534.44 Da        Isoelectric Point: 6.8853

>NTDB_id=912098 U0034_RS11855 WP_085227802.1 2637738..2639294(-) (comM) [Trinickia caryophylli strain HAMBI_2159]
MSLAVVRSRAPASGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCRFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPVASLAGREFAGELSLTGALRPMRGAFAMACGTARRAPREADAQQGAAPLPELYLPLASADEAA
LVPGVAVYGAPDLPALCAHLAGATDSRLAPLDAPAIDRHEAGAPPDMADVIGQPGARRALEIAAAGGHHMLMVGPPGAGK
SMLAARLPGLLPPMTDEEALASAALLSASVLGFSPAQWRQRPFRAPHHSSSAAALVGGRNPPQPGEITLAHLGVLFLDEL
PEFDRDVLETLREPLEAGRITISRAALQTDFPAACQLVAAMNPCPCGWRGDPSGRCRCTPEIAARYLRKLSGPLVDRIDI
QIELPALTPAELSARAAGSGESSASIAPRIAAARERQLARQGKTNRELSGREVDDVCRLDSAGELLLREASERFGWSARS
YYRVLKVARSIADLAGDAMPDSAQVAEAIQYRRALTPA

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=912098 U0034_RS11855 WP_085227802.1 2637738..2639294(-) (comM) [Trinickia caryophylli strain HAMBI_2159]
ATGTCGCTTGCCGTGGTGCGCTCGCGCGCGCCGGCGTCCGGCCGCGCGCCCGAAGTAACCGTCGAAGTCCATCTCGCCAA
CGGGTTGCCGTCGTTTTCGATCGTCGGACTGCCCGATCTCGAAGTCCGCGAAAGCCGCGAGCGCGTACGCGCCGCCCTGC
AAAACTGCCGGTTCGACTTTCCCGTCCGGCGTATCACCGTCAATCTCGCACCGGCCGATCTGCCTAAGGAATCGGGGCGT
TTCGATCTGCCGATCGCGCTCGGGATTCTCGCGGCGAGCGGGCAGATTCCGGTGGCCTCGCTGGCCGGCCGCGAGTTCGC
GGGCGAGTTGTCGCTGACCGGCGCGCTGCGTCCGATGCGCGGGGCCTTCGCGATGGCCTGCGGCACCGCGCGGCGCGCGC
CGCGCGAAGCGGATGCGCAGCAGGGTGCCGCCCCGCTGCCCGAACTCTATCTTCCGCTCGCAAGCGCCGACGAAGCCGCG
CTCGTACCCGGCGTCGCCGTCTACGGCGCCCCCGACTTGCCCGCTCTTTGTGCGCATCTGGCCGGCGCCACGGACTCGCG
GCTCGCACCGCTCGATGCGCCGGCCATCGACCGCCATGAAGCCGGCGCGCCGCCCGATATGGCCGACGTCATCGGCCAGC
CCGGCGCGCGGCGCGCGCTCGAAATCGCCGCGGCCGGCGGGCACCATATGTTGATGGTCGGGCCGCCGGGCGCGGGCAAG
TCGATGCTTGCCGCACGGCTGCCGGGCCTCCTGCCGCCCATGACCGACGAAGAGGCCCTGGCGTCGGCCGCGCTGCTCTC
GGCAAGCGTGCTCGGCTTTTCGCCGGCGCAGTGGCGGCAACGGCCGTTTCGCGCCCCTCATCACTCGTCGAGTGCGGCGG
CGCTCGTCGGCGGCCGCAACCCGCCTCAGCCCGGCGAAATCACGCTGGCGCACCTCGGCGTGCTGTTTCTGGACGAGTTG
CCGGAATTCGACCGCGACGTGCTCGAAACGCTGCGGGAGCCGCTCGAGGCAGGCCGCATTACGATCTCGCGGGCAGCGCT
GCAAACCGATTTTCCGGCGGCCTGCCAACTGGTGGCCGCCATGAACCCCTGCCCTTGCGGCTGGCGCGGCGATCCGTCGG
GCCGCTGCCGGTGCACGCCCGAGATCGCCGCGCGTTATTTGCGCAAGCTCTCCGGGCCGCTCGTCGATCGCATCGACATT
CAGATCGAACTGCCCGCTCTTACGCCGGCCGAGCTCTCGGCGCGCGCGGCTGGCTCGGGGGAATCCAGTGCGTCGATCGC
GCCGCGCATTGCTGCGGCGCGCGAGCGGCAACTGGCGCGGCAAGGGAAGACGAACCGAGAGTTGAGCGGACGCGAAGTGG
ACGACGTGTGTCGCCTCGACAGCGCCGGCGAGCTGCTGTTGCGCGAAGCGAGCGAGCGCTTTGGATGGTCCGCACGCAGC
TATTACCGCGTGCTGAAGGTCGCGCGTTCCATCGCGGACCTGGCTGGCGACGCAATGCCCGATTCGGCGCAGGTGGCCGA
GGCCATTCAGTATCGGCGAGCATTGACACCCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-411)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7EPT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50

99.228

0.496
  comM Vibrio campbellii strain DS40M4

48.833

99.228

0.485
  comM Haemophilus influenzae Rd KW20

47.767

99.421

0.475
  comM Legionella pneumophila str. Paris

46.615

99.807

0.465
  comM Legionella pneumophila strain ERS1305867

46.615

99.807

0.465
  comM Glaesserella parasuis strain SC1401

46.796

99.421

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

98.069

0.423