Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0036_RS01235 Genome accession   NZ_CP139967
Coordinates   270436..271980 (-) Length   514 a.a.
NCBI ID   WP_063236628.1    Uniprot ID   A0A375FUE4
Organism   Cupriavidus oxalaticus strain HAMBI_2164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265436..276980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0036_RS01210 (U0036_01215) - 265754..266362 (+) 609 WP_063236624.1 hypothetical protein -
  U0036_RS01215 (U0036_01220) - 266466..267107 (+) 642 WP_063236625.1 LysE family transporter -
  U0036_RS01220 (U0036_01225) - 267180..267350 (+) 171 WP_169834794.1 hypothetical protein -
  U0036_RS01225 (U0036_01230) nagA 267732..268865 (+) 1134 WP_063236626.1 N-acetylglucosamine-6-phosphate deacetylase -
  U0036_RS01230 (U0036_01235) zwf 268938..270425 (+) 1488 WP_063236627.1 glucose-6-phosphate dehydrogenase -
  U0036_RS01235 (U0036_01240) comM 270436..271980 (-) 1545 WP_063236628.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0036_RS01240 (U0036_01245) - 272087..272365 (-) 279 WP_063236629.1 accessory factor UbiK family protein -
  U0036_RS01245 (U0036_01250) - 272769..273554 (+) 786 WP_063236630.1 TorF family putative porin -
  U0036_RS01250 (U0036_01255) - 273608..273946 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  U0036_RS01255 (U0036_01260) - 273986..275524 (+) 1539 WP_063236631.1 ammonium transporter -
  U0036_RS01260 (U0036_01265) - 275553..276008 (+) 456 WP_147318544.1 hypothetical protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54348.24 Da        Isoelectric Point: 8.1458

>NTDB_id=912056 U0036_RS01235 WP_063236628.1 270436..271980(-) (comM) [Cupriavidus oxalaticus strain HAMBI_2164]
MSLAVLGSRALTGIAAPPVRVETHLANGLPVFTIVGLADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPADALDHHEFAAELSLSGELRPVRGALAMAMGLAQDNAARHAAGATPCAFLVASGNGPEAALIE
DLAVHAAATLREVCEHLGGRPDARLPRAAPAALPRSVASGPDMRDVRGQAQARRAMEVAAAGQHSALLVGPPGTGKSMLA
QRLPGLLPPMSLQEALESAAVMSLTPGGFRTALWGQRPCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLESGRITIARANGHADFPASFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGPMLDRIDLQVEV
PAQDQGEMLDGPPGEPSAAVRERALAARMLQLARQGKPNSELGGREIEQHCQLESQAQALLRGAMARLSWSARAYFRVLK
VARTIADLDNAAVLSAAHVAEAIQYRRALRMASG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=912056 U0036_RS01235 WP_063236628.1 270436..271980(-) (comM) [Cupriavidus oxalaticus strain HAMBI_2164]
ATGAGCCTCGCCGTCCTGGGCAGCCGGGCACTGACCGGCATCGCGGCGCCGCCGGTGCGTGTCGAAACCCACCTGGCCAA
CGGCCTGCCGGTATTCACCATCGTCGGCCTGGCCGACACCGGCGTACGCGAGAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGCTACGAGTTCCCCAACCGCCGCATTACCGTCAACCTGGCGCCAGCCGACCTGCCCAAGGAATCCGGCCGC
TTCGACCTGGCGATCGCGCTCGGCATCCTGGCCGCCAGCGGCCAGATCCCCGCCGATGCGCTCGACCATCATGAATTCGC
CGCCGAGCTGTCGCTGTCCGGCGAGCTGCGGCCGGTGCGCGGCGCGCTGGCCATGGCGATGGGCCTGGCGCAGGACAACG
CCGCGCGCCACGCTGCCGGCGCCACCCCATGCGCTTTCCTGGTGGCCAGCGGCAACGGGCCCGAAGCGGCATTGATCGAA
GACCTGGCGGTCCACGCCGCCGCCACGCTGCGCGAGGTGTGCGAGCACCTCGGTGGCCGGCCGGACGCCCGCCTGCCGCG
CGCCGCCCCGGCCGCGCTGCCCAGGTCGGTCGCCAGTGGCCCCGACATGCGCGACGTGCGCGGCCAGGCGCAGGCGCGCC
GGGCCATGGAAGTGGCCGCCGCCGGCCAGCACTCGGCCTTGCTGGTCGGTCCGCCAGGCACTGGCAAGTCGATGCTGGCG
CAGCGCCTGCCGGGCCTGCTGCCGCCGATGTCGCTGCAGGAGGCACTGGAATCCGCCGCGGTCATGAGCCTGACGCCGGG
CGGCTTCCGTACCGCGCTGTGGGGCCAGCGCCCATGCCGCGCGCCGCACCATACGGCGTCCGGCCCGGCCATGGTCGGCG
GCGGCGGCAACCCGCGCCCCGGCGAGATCTCGCTGGCACACCACGGTGTGCTGTTCCTCGATGAACTGCCGGAATTCGAC
CGCCGGGTCCTGGAAGTCCTGCGAGAGCCGCTGGAGTCCGGCCGCATCACCATCGCGCGCGCCAACGGACATGCCGATTT
CCCTGCCAGCTTCCAGTTCGTGGCGGCGATGAACCCGTGCCCGTGCGGCTACCTGGGCCATCCCGACCGCCCCTGCCGCT
GCACGCCCGACCAGGTGCGGCGCTACCAGTCGCGCATTTCCGGGCCGATGCTCGACCGGATCGATCTGCAGGTGGAAGTG
CCCGCCCAGGACCAGGGCGAGATGCTCGACGGCCCGCCCGGCGAACCCAGCGCCGCGGTGCGCGAGCGCGCGCTGGCAGC
GCGCATGCTGCAACTGGCGCGGCAGGGCAAGCCCAACAGCGAGCTGGGCGGGCGCGAGATCGAGCAGCACTGCCAGCTGG
AATCGCAGGCACAGGCGCTGCTGCGCGGGGCGATGGCGCGGCTGTCGTGGTCGGCACGCGCGTACTTCCGCGTGCTGAAG
GTGGCGCGCACGATCGCCGATCTGGACAACGCGGCGGTGCTGAGCGCCGCGCACGTGGCCGAGGCGATCCAGTACCGGCG
TGCGCTGCGGATGGCGTCAGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A375FUE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.758

99.611

0.516
  comM Vibrio cholerae strain A1552

51.758

99.611

0.516
  comM Haemophilus influenzae Rd KW20

49.903

100

0.502
  comM Legionella pneumophila strain ERS1305867

49.225

100

0.494
  comM Legionella pneumophila str. Paris

49.225

100

0.494
  comM Glaesserella parasuis strain SC1401

47.876

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.58

100

0.436