Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0042_RS20670 Genome accession   NZ_CP139965
Coordinates   4598503..4600041 (-) Length   512 a.a.
NCBI ID   WP_114809372.1    Uniprot ID   -
Organism   Paraburkholderia kururiensis strain HAMBI 2494     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4593503..4605041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0042_RS20655 (U0042_20660) - 4595345..4596700 (+) 1356 WP_198665229.1 sigma-54-dependent transcriptional regulator -
  U0042_RS20660 (U0042_20665) - 4596821..4597345 (-) 525 WP_114809521.1 peroxiredoxin family protein -
  U0042_RS20665 (U0042_20670) - 4597484..4598161 (+) 678 WP_232833229.1 hypothetical protein -
  U0042_RS20670 (U0042_20675) comM 4598503..4600041 (-) 1539 WP_114809372.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0042_RS20675 (U0042_20680) - 4600148..4600402 (-) 255 WP_114809371.1 accessory factor UbiK family protein -
  U0042_RS20680 (U0042_20685) - 4600812..4601150 (+) 339 WP_006048089.1 P-II family nitrogen regulator -
  U0042_RS20685 (U0042_20690) - 4601177..4602685 (+) 1509 WP_114809370.1 ammonium transporter -
  U0042_RS20690 (U0042_20695) gshA 4602957..4604246 (+) 1290 WP_114809369.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53765.51 Da        Isoelectric Point: 7.6543

>NTDB_id=912050 U0042_RS20670 WP_114809372.1 4598503..4600041(-) (comM) [Paraburkholderia kururiensis strain HAMBI 2494]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCRFDFPVSRITVNLAPADLPKESGR
FDLPVALGILAASGQIPAESLVGREFAGELSLTGALRPMRGAFAMACGTARSGAGAEGRTPELYLPASNATEAALVPGVA
VFGAADLPSLCAHLAGAADARLSPVDTPALPDTPRHAAPDMADVIGQRGARRALEVAAAGGHHMLMIGPPGAGKSMLAAR
LPGLLPPMTDEEALSSAALLSSSMLGFSPHQWRQRPFRAPHHSSSAAALVGGRNPPQPGEITLAHLGVLFLDELPEFDRH
VLETLREPLEAGRITISRAALQADFPAACQLVAAMNPCPCGWRGDPGGRCRCTPDGAARYMRKLSGPLLDRIDIQIEIPA
LSATELAGRAAAPGEPSAAIAARVRAARERQLARQGKTNRELAGREVDEVCETDAEGETLLREAGERFGWSARAYYRVLK
VARTIADLAGAGRLTAAHVAEAVQYRRTALSV

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=912050 U0042_RS20670 WP_114809372.1 4598503..4600041(-) (comM) [Paraburkholderia kururiensis strain HAMBI 2494]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCGGCTGCTGGCCGCGCGCCCGAAGTCACGGTCGAGGTTCACCTCGCCAA
CGGATTACCCTCGTTCTCCATCGTCGGCCTGCCCGACCTCGAAGTGCGCGAAAGCCGCGAGCGTGTGCGCGCCGCGCTTC
AGAACTGCCGCTTCGACTTTCCAGTCAGCCGCATAACCGTCAACCTGGCTCCCGCCGACCTGCCCAAGGAATCGGGGCGC
TTCGATCTGCCCGTCGCGCTCGGCATTCTCGCGGCAAGCGGCCAGATTCCCGCGGAATCGCTGGTCGGGCGAGAGTTCGC
CGGAGAACTCTCGCTTACAGGGGCGTTGAGGCCCATGCGCGGCGCGTTCGCCATGGCGTGCGGCACGGCCCGCAGTGGTG
CCGGCGCCGAGGGCAGAACGCCCGAGCTATATCTGCCCGCGTCGAACGCGACCGAGGCCGCTCTCGTGCCGGGCGTCGCG
GTGTTCGGCGCTGCGGATCTGCCTTCGCTCTGCGCGCACCTAGCCGGCGCGGCGGACGCGCGCCTTTCGCCCGTCGATAC
GCCGGCGCTGCCCGACACGCCCCGCCACGCAGCGCCCGACATGGCCGACGTGATCGGCCAGCGCGGCGCGCGCCGTGCGC
TCGAGGTCGCCGCGGCCGGCGGCCACCACATGCTGATGATCGGGCCTCCAGGAGCCGGCAAGTCGATGCTCGCCGCGCGC
TTGCCGGGACTCCTGCCGCCCATGACCGACGAAGAAGCGCTGAGTTCGGCCGCCCTGTTGTCGTCGAGCATGCTCGGCTT
CTCGCCGCATCAATGGCGGCAGCGGCCGTTTCGCGCGCCACATCATTCGTCGAGCGCCGCCGCGCTGGTGGGCGGTCGCA
ATCCGCCGCAGCCCGGCGAAATCACGCTCGCGCATCTCGGCGTGCTGTTCCTCGATGAATTGCCCGAATTCGATCGCCAC
GTCCTGGAGACACTGCGCGAGCCGCTCGAAGCCGGCCGTATCACGATCTCGCGCGCCGCGCTGCAGGCGGACTTTCCGGC
CGCCTGCCAGCTGGTGGCGGCCATGAATCCCTGCCCCTGCGGCTGGCGCGGCGATCCGGGCGGCCGATGCCGCTGCACGC
CGGATGGCGCCGCCCGCTACATGCGCAAGCTGTCGGGACCGCTTCTGGACCGCATCGACATCCAGATCGAGATTCCCGCC
CTTAGCGCGACGGAGCTCGCGGGGCGGGCCGCCGCACCGGGCGAGCCCAGCGCGGCCATTGCCGCGCGTGTTCGCGCTGC
ACGCGAGCGGCAGTTGGCTCGGCAGGGAAAAACCAATCGCGAACTAGCCGGACGGGAGGTGGACGAAGTCTGCGAAACGG
ACGCAGAAGGCGAAACGCTGTTGCGGGAAGCAGGCGAGCGCTTCGGCTGGTCGGCGCGTGCGTATTACCGCGTGCTGAAG
GTGGCGCGCACCATCGCCGACCTGGCCGGCGCCGGCCGGCTCACGGCCGCGCACGTCGCCGAAGCGGTGCAGTACCGGCG
GACGGCGCTATCCGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.277

99.414

0.51
  comM Vibrio campbellii strain DS40M4

50

98.828

0.494
  comM Haemophilus influenzae Rd KW20

48.622

99.219

0.482
  comM Legionella pneumophila strain ERS1305867

47.162

99.805

0.471
  comM Legionella pneumophila str. Paris

47.162

99.805

0.471
  comM Glaesserella parasuis strain SC1401

46.245

98.828

0.457
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.26

97.07

0.42