Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   L6419_RS08320 Genome accession   NZ_AP025332
Coordinates   1757538..1758260 (-) Length   240 a.a.
NCBI ID   WP_237375320.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context


Location: 1752538..1763260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS08295 (GUT184_16010) sufU 1752581..1753021 (-) 441 WP_120172171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  L6419_RS08300 (GUT184_16020) - 1753008..1754234 (-) 1227 WP_024531876.1 cysteine desulfurase -
  L6419_RS08305 (GUT184_16030) sufD 1754236..1755498 (-) 1263 WP_024531875.1 Fe-S cluster assembly protein SufD -
  L6419_RS08310 (GUT184_16040) sufC 1755515..1756288 (-) 774 WP_024531874.1 Fe-S cluster assembly ATPase SufC -
  L6419_RS08315 (GUT184_16050) - 1756381..1757541 (-) 1161 WP_120172178.1 glycosyltransferase family 4 protein -
  L6419_RS08320 (GUT184_16060) mecA 1757538..1758260 (-) 723 WP_237375320.1 adaptor protein MecA Regulator
  L6419_RS08325 (GUT184_16070) - 1758471..1759307 (-) 837 WP_155964977.1 undecaprenyl-diphosphate phosphatase -
  L6419_RS08330 (GUT184_16080) - 1759440..1761002 (+) 1563 WP_156021675.1 ABC transporter substrate-binding protein/permease -
  L6419_RS08335 (GUT184_16090) - 1760995..1761738 (+) 744 WP_024531869.1 amino acid ABC transporter ATP-binding protein -
  L6419_RS08340 (GUT184_16100) - 1761984..1762193 (-) 210 WP_024531868.1 hypothetical protein -
  L6419_RS08345 (GUT184_16110) - 1762279..1763178 (-) 900 WP_024531867.1 SPFH domain-containing protein -

Sequence


Protein


Download         Length: 240 a.a.        Molecular weight: 28003.58 Da        Isoelectric Point: 4.0877

>NTDB_id=91203 L6419_RS08320 WP_237375320.1 1757538..1758260(-) (mecA) [Streptococcus ruminantium strain GUT-184]
MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDL
DQNLNFDEFTDLSDLGDVASMTPDEFFKSLEQTVREKSAADVAAVQHLEDIEQAEEDEDGEQERYIYYILEFKKIEELFI
FVGTVDYSIEESELYKMDGYYYLTVLVDIENRSKQYPEHLLSRMLEFSNDTKLARPVLQEHGMLLLSHAAIEELRKVTIA

Nucleotide


Download         Length: 723 bp        

>NTDB_id=91203 L6419_RS08320 WP_237375320.1 1757538..1758260(-) (mecA) [Streptococcus ruminantium strain GUT-184]
ATGAAAGTAAAACAAATTAGTGATTCTACCTTAAAAATCACTATCAAATTGGATGACTTGGAAGAAAGAGGCATGGAACT
TTCTGACTTTCTTATCCCACAGGAGAAGACAGAAGAGTTTTTCTACACAGTTCTGGATGAGCTGGACTTGCCGATGACTT
TCCGCGAAAGTGGTATGCTGAGTTTCCGTGTGACACCAAAGCCTGATAGGGTTGACATTTTTGTGACCAAATCTGATTTG
GATCAAAATTTGAATTTTGATGAATTTACAGATTTGTCTGACCTTGGTGATGTTGCCAGCATGACTCCAGATGAATTTTT
CAAGAGTTTGGAGCAGACGGTCCGTGAGAAGAGTGCCGCAGATGTAGCTGCTGTCCAACATCTAGAAGATATTGAGCAGG
CAGAAGAGGATGAGGACGGAGAGCAAGAACGGTATATCTACTATATTTTAGAGTTCAAAAAGATTGAAGAACTGTTTATT
TTTGTTGGTACGGTTGACTATTCGATTGAAGAATCGGAACTTTATAAGATGGATGGTTACTATTATCTGACAGTTCTTGT
TGATATAGAAAACCGTTCCAAGCAATATCCAGAGCACCTTCTTTCACGTATGTTAGAGTTTTCCAACGATACAAAATTAG
CAAGACCTGTCTTGCAAGAACACGGGATGCTCCTCCTCTCCCATGCAGCGATTGAAGAGCTTAGAAAGGTTACAATAGCA
TGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

55.738

100

0.567

  mecA Streptococcus pneumoniae D39

55.738

100

0.567

  mecA Streptococcus pneumoniae R6

55.738

100

0.567

  mecA Streptococcus pneumoniae TIGR4

55.738

100

0.567

  mecA Streptococcus mutans UA159

50

100

0.508

  mecA Streptococcus thermophilus LMD-9

46.185

100

0.479

  mecA Streptococcus thermophilus LMG 18311

45.783

100

0.475


Multiple sequence alignment