Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0013_RS23580 Genome accession   NZ_CP139958
Coordinates   4932746..4934269 (+) Length   507 a.a.
NCBI ID   WP_016930477.1    Uniprot ID   A0A5C7BTY6
Organism   Serratia marcescens subsp. marcescens ATCC 13880     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4927746..4939269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0013_RS23555 (U0013_23550) - 4927947..4928873 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  U0013_RS23560 (U0013_23555) ilvM 4928897..4929154 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  U0013_RS23565 (U0013_23560) ilvG 4929151..4930797 (-) 1647 WP_033639153.1 acetolactate synthase 2 catalytic subunit -
  U0013_RS23570 (U0013_23565) ilvL 4930940..4931038 (-) 99 WP_013814970.1 ilv operon leader peptide -
  U0013_RS23575 (U0013_23570) - 4931172..4932404 (-) 1233 WP_004929950.1 MFS transporter -
  U0013_RS23580 (U0013_23575) comM 4932746..4934269 (+) 1524 WP_016930477.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0013_RS23585 (U0013_23580) - 4934297..4934635 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  U0013_RS23590 (U0013_23585) hdfR 4934755..4935582 (+) 828 WP_028128092.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54467.66 Da        Isoelectric Point: 7.6226

>NTDB_id=911997 U0013_RS23580 WP_016930477.1 4932746..4934269(+) (comM) [Serratia marcescens subsp. marcescens ATCC 13880]
MSLALIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSRSHTAQHL
LEVCAFLLGQGELPVAATPPDADNACENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
AEALESLAIASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKAH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=911997 U0013_RS23580 WP_016930477.1 4932746..4934269(+) (comM) [Serratia marcescens subsp. marcescens ATCC 13880]
ATGTCACTGGCGTTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAGCGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTACCCCTCGCGCCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCTGGCTCACTGCGCGCGGTCAGGGGAGCGATCCCGGCGGCACTGGCGGCGGCTGATGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCGCTCCCATACCGCCCAACACCTG
CTGGAAGTCTGCGCTTTTTTGCTCGGCCAAGGCGAACTGCCGGTAGCGGCCACGCCCCCCGATGCGGACAACGCGTGCGA
AAACGCCGACCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGTTGATTGGGCCACCGGGCACCGGTAAAACCATGCTGGCCAGCCGTCTCACGGGCTTGCTGCCGCCGCTGACGGAG
GCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAGCATCACATTCCCGCCGCGCTACCATGGCGCCAGAGGCCGTT
TCGCGCGCCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGGGTGCAACTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGTTGTTGCCGCCGGGTACGCTCAGTCATCGGAAAGCTCAT
GGAGAAAGCAGCGAACAAGTACGGAAAAGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGAGATTGCGTTTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACA
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGCCATCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGCAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7BTY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

51.205

98.225

0.503
  comM Legionella pneumophila strain ERS1305867

51.205

98.225

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452