Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U0544_RS06115 Genome accession   NZ_CP139944
Coordinates   1133551..1133877 (+) Length   108 a.a.
NCBI ID   WP_002121134.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CARB128     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128551..1138877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS06090 (U0544_06115) hemC 1129166..1130083 (+) 918 WP_057082133.1 hydroxymethylbilane synthase -
  U0544_RS06095 (U0544_06120) hemD 1130087..1130854 (+) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  U0544_RS06100 (U0544_06125) - 1130863..1131705 (+) 843 WP_002121187.1 hypothetical protein -
  U0544_RS06105 (U0544_06130) - 1131715..1132908 (+) 1194 WP_002121267.1 hypothetical protein -
  U0544_RS06110 (U0544_06135) - 1132916..1133356 (+) 441 WP_002121251.1 acyl-CoA thioesterase -
  U0544_RS06115 (U0544_06140) hns 1133551..1133877 (+) 327 WP_002121134.1 H-NS family nucleoid-associated regulatory protein Regulator
  U0544_RS06120 (U0544_06145) gspN 1134212..1134955 (+) 744 WP_002121195.1 type II secretion system protein N -
  U0544_RS06125 (U0544_06150) - 1134955..1135791 (+) 837 WP_002121214.1 type II secretion system protein N -
  U0544_RS06130 (U0544_06155) gspD 1135833..1138109 (+) 2277 WP_002121232.1 type II secretion system secretin GspD -
  U0544_RS06135 (U0544_06160) - 1138150..1138776 (+) 627 WP_002121153.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=911920 U0544_RS06115 WP_002121134.1 1133551..1133877(+) (hns) [Acinetobacter pittii strain CARB128]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGTQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=911920 U0544_RS06115 WP_002121134.1 1133551..1133877(+) (hns) [Acinetobacter pittii strain CARB128]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTACTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991