Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SJH90_RS25900 Genome accession   NZ_CP139937
Coordinates   5381059..5382579 (+) Length   506 a.a.
NCBI ID   WP_407084557.1    Uniprot ID   -
Organism   Pluralibacter gergoviae strain L1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5376059..5387579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH90_RS25880 - 5377652..5378581 (-) 930 WP_043081549.1 branched-chain amino acid transaminase -
  SJH90_RS25885 ilvM 5378599..5378862 (-) 264 WP_043081548.1 acetolactate synthase 2 small subunit -
  SJH90_RS25890 ilvG 5378859..5380505 (-) 1647 WP_048254802.1 acetolactate synthase 2 catalytic subunit -
  SJH90_RS25895 ilvL 5380645..5380743 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SJH90_RS25900 comM 5381059..5382579 (+) 1521 WP_407084557.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SJH90_RS25905 - 5382604..5382942 (-) 339 WP_043081544.1 DUF413 domain-containing protein -
  SJH90_RS25910 hdfR 5383061..5383882 (+) 822 WP_043081543.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54473.92 Da        Isoelectric Point: 8.8330

>NTDB_id=911890 SJH90_RS25900 WP_407084557.1 5381059..5382579(+) (comM) [Pluralibacter gergoviae strain L1]
MSLAIVYTRAALGVNAPPITVEVHISSGLPGLTLVGLPETAVKESRDRVRSAIITSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTGNLSQYELIGELALTGALRGVSGAISGAVEAIAAGRRIILPAENGPEAGLLDDARCYVAAHL
QEVCAFLEGKAGLDNPVALLPDVRDGEACLSEIIGQQQGKRALEITAAGGHNVLLIGPPGTGKTMLAARLPGILPPLSNE
EALQSAAIMSLLSASRVQQQWRKRPFRSPHHSASLAAMVGGGSIPLPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKVHISRTRAKITYPARFQLIAAMNPSPTGHYQGQHNRCSPEQTMRYLARLSGPFLDRFDLSLEIPLPPAGLLSQPRTEG
ERSAEVKKRVIAARDRQMARQGRLNALLGSSQISEYCALRNEDAVWLEETLVRLGLSIRAWQRLLKVSRTIADLAGVEQI
TRAHLQEALGYRAVERLLAHLQKMIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=911890 SJH90_RS25900 WP_407084557.1 5381059..5382579(+) (comM) [Pluralibacter gergoviae strain L1]
ATGTCACTGGCAATAGTTTACACGCGCGCCGCGCTCGGCGTGAATGCGCCCCCGATAACCGTTGAGGTTCATATCAGCAG
CGGTCTTCCCGGACTGACGCTGGTCGGCCTGCCGGAAACGGCGGTGAAGGAGTCCCGGGATCGGGTGCGCAGCGCCATCA
TCACCAGCGGGTACGAGTTTCCGGCAAAAAAGATAACTATCAATCTCGCCCCGGCCGACCTGCCGAAAGAGGGAGGACGA
TACGATCTGCCCATCGCCATCGCGCTTCTGGCGGCTTCTGAGCAGCTTAAGACCGGCAATCTGTCCCAGTACGAGCTGAT
AGGCGAACTGGCGCTTACGGGCGCACTACGCGGCGTCAGCGGTGCGATTTCGGGTGCCGTAGAGGCCATTGCCGCCGGGC
GGCGGATCATCCTGCCGGCGGAGAACGGGCCGGAGGCCGGGCTGCTGGACGATGCCCGCTGCTATGTTGCCGCCCATCTG
CAGGAGGTGTGCGCTTTTCTGGAGGGAAAGGCCGGGCTTGATAACCCCGTAGCGCTGCTGCCGGATGTTCGCGACGGCGA
GGCCTGCCTCAGTGAGATTATCGGGCAGCAGCAGGGGAAGCGCGCGCTGGAGATAACCGCGGCGGGCGGACATAACGTGC
TGCTGATCGGCCCTCCGGGCACCGGGAAGACCATGCTTGCCGCCCGCCTGCCCGGGATACTTCCGCCGCTCAGCAACGAA
GAAGCGCTGCAGAGCGCCGCCATCATGAGCCTGCTCAGCGCAAGCCGCGTTCAGCAGCAGTGGCGAAAGCGCCCGTTCCG
CTCTCCTCACCACAGCGCATCGCTGGCCGCGATGGTCGGCGGCGGCTCAATTCCCTTGCCCGGCGAGATCTCACTGGCCC
ACAACGGTATTCTGTTCCTCGATGAGCTACCCGAATTCGAGCGCCGCGTGCTTGACGCGCTGCGGGAGCCGATTGAGTCC
GGCAAGGTACATATTTCACGAACCCGGGCAAAGATCACTTACCCGGCGCGCTTTCAGCTGATTGCGGCCATGAACCCCAG
CCCGACGGGACACTATCAGGGACAGCACAATCGCTGTTCGCCGGAACAGACAATGCGCTACCTCGCACGGTTGTCCGGCC
CTTTTCTCGACCGTTTCGATCTCTCGCTGGAGATCCCGCTGCCCCCGGCAGGGCTACTGAGCCAGCCGCGGACGGAAGGC
GAGCGCAGCGCCGAGGTGAAAAAGCGGGTCATCGCGGCCCGGGACAGGCAGATGGCGCGCCAGGGCAGGCTCAATGCCCT
GCTTGGCAGCAGCCAGATTAGCGAATACTGCGCGCTGCGTAACGAAGACGCCGTCTGGCTTGAAGAGACGCTGGTCAGAC
TGGGATTGTCGATCAGGGCGTGGCAGCGGCTGCTGAAGGTATCGCGCACCATTGCCGATCTGGCGGGAGTGGAGCAGATT
ACGCGGGCACATCTTCAGGAGGCCCTGGGCTATCGCGCCGTCGAACGGCTTCTCGCCCATCTGCAGAAAATGATCGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.684

100

0.597
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Haemophilus influenzae Rd KW20

57.76

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.727

100

0.453