Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0358_RS01220 Genome accession   NZ_CP139873
Coordinates   276186..277730 (+) Length   514 a.a.
NCBI ID   WP_322406751.1    Uniprot ID   -
Organism   Idiomarina sp. PL1-037     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 271186..282730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0358_RS01190 (U0358_01190) - 271549..271827 (-) 279 WP_322406745.1 type II toxin-antitoxin system RelE/ParE family toxin -
  U0358_RS01195 (U0358_01195) - 271837..272109 (-) 273 WP_322406746.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  U0358_RS01200 (U0358_01200) - 272220..272951 (-) 732 WP_322406747.1 DsbA family protein -
  U0358_RS01205 (U0358_01205) - 272981..273505 (-) 525 WP_322406748.1 protein disulfide oxidoreductase -
  U0358_RS01210 (U0358_01210) - 273498..275576 (-) 2079 WP_322406749.1 protein-disulfide reductase DsbD family protein -
  U0358_RS01215 (U0358_01215) - 275698..275877 (+) 180 WP_322406750.1 hypothetical protein -
  U0358_RS01220 (U0358_01220) comM 276186..277730 (+) 1545 WP_322406751.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0358_RS01225 (U0358_01225) - 277889..278170 (+) 282 WP_286824126.1 ADP-ribosyl-(dinitrogen reductase) hydrolase -
  U0358_RS01230 (U0358_01230) - 278200..278538 (+) 339 WP_322406752.1 hypothetical protein -
  U0358_RS01235 (U0358_01235) ltaE 278654..279676 (-) 1023 WP_322406753.1 low-specificity L-threonine aldolase -
  U0358_RS01240 (U0358_01240) - 279805..280770 (+) 966 WP_322406754.1 cysteine synthase family protein -
  U0358_RS01245 (U0358_01245) - 280800..281972 (+) 1173 WP_322406755.1 cystathionine gamma-synthase -
  U0358_RS01250 (U0358_01250) - 282175..282405 (+) 231 WP_317498155.1 hypothetical protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 56180.51 Da        Isoelectric Point: 8.2415

>NTDB_id=911648 U0358_RS01220 WP_322406751.1 276186..277730(+) (comM) [Idiomarina sp. PL1-037]
MALARVYTRALIGIHAPEIRVEVDLARGMPGFTMVGMPATTVKEARDRVKTALMNAGFEYPPATRITVNLAPADIPKTGA
RYDLAIAVGILAASGQIPDSILEQAEFYGELALTGELRAVNGLIPALLACRSKKRQAFVPIANQQEAGLVREQKSWLSAD
LVSVYEHLHDHQPLRESKPINWAKESSNDDGNLADVVGQEQAKRALLLSAAGKHHLLFVGPPGTGKTMLAQRLNGILPAL
TEQEAMEIAAVKSVSFDYHHAEALTRRELRNPHHTCTAAALVGGGTGNSIRPGEISLANNGLLFLDEMPEFSRHVLDCLR
EPLGSGEITINRAGYNVKFPANFQLVCALNPSPCGQFDGSLANCRSTPDQILKYLNKLSGPLLDRIDIQVMVPRETESMS
LNGGAKRNSQMTSAEAKSLVEKTRQCQIQRQGCLNSQIKPKALKQICELSDKTEAFLAKASEKMKLSHRAYHRTLRLART
IADLADSNMIEQQHLAEALNYRALDRLIDQVQSL

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=911648 U0358_RS01220 WP_322406751.1 276186..277730(+) (comM) [Idiomarina sp. PL1-037]
ATGGCGTTAGCGCGAGTTTATACCCGGGCATTGATAGGTATTCATGCGCCGGAAATTCGGGTTGAAGTGGATCTGGCAAG
GGGAATGCCAGGCTTTACTATGGTCGGGATGCCGGCAACTACAGTTAAAGAGGCTCGTGATCGGGTCAAAACCGCCTTGA
TGAACGCGGGATTTGAATACCCGCCAGCCACGCGTATTACAGTGAATTTGGCGCCAGCGGATATCCCCAAAACCGGGGCG
CGTTATGATTTGGCCATAGCGGTGGGGATATTGGCGGCTTCGGGACAAATACCGGACAGTATTTTAGAGCAAGCAGAATT
CTATGGTGAGCTGGCGTTAACCGGCGAGTTGCGCGCTGTGAATGGTTTAATTCCGGCATTATTGGCGTGCCGTAGTAAAA
AACGTCAGGCGTTTGTGCCTATTGCTAACCAGCAGGAAGCGGGGTTAGTACGTGAACAAAAGAGCTGGTTGTCGGCCGAT
TTGGTCAGTGTTTATGAACATTTGCACGATCACCAGCCACTGAGAGAATCAAAGCCGATAAATTGGGCAAAGGAATCATC
GAACGATGATGGTAATTTAGCCGATGTGGTCGGGCAGGAGCAAGCTAAGCGCGCCTTGTTGTTATCTGCGGCAGGTAAGC
ACCACTTGTTGTTCGTCGGGCCACCAGGCACGGGCAAAACCATGCTGGCGCAACGGCTTAATGGCATATTACCGGCACTG
ACCGAGCAGGAAGCTATGGAAATTGCCGCGGTTAAGTCGGTGTCTTTTGATTATCATCATGCTGAGGCGTTAACACGGCG
CGAGCTGCGAAATCCGCACCATACCTGTACAGCCGCTGCGCTTGTGGGAGGTGGAACGGGTAATTCGATTCGTCCAGGAG
AAATATCCTTAGCAAACAATGGGTTATTATTTTTAGATGAGATGCCCGAGTTCAGTCGACATGTATTGGACTGCTTACGT
GAACCACTCGGAAGCGGTGAAATTACCATTAATCGTGCAGGATACAACGTCAAATTCCCGGCTAATTTTCAGCTGGTTTG
CGCGCTGAACCCTTCTCCTTGCGGTCAATTCGATGGCTCCTTAGCTAACTGCCGGTCCACACCTGACCAAATTCTCAAGT
ATTTAAATAAGCTTTCAGGTCCTTTGTTGGATCGTATCGACATCCAGGTGATGGTGCCACGAGAAACGGAATCAATGAGT
CTGAATGGTGGAGCCAAACGCAATAGCCAAATGACTTCTGCAGAAGCAAAAAGCTTAGTAGAGAAAACCAGGCAGTGCCA
AATACAGCGACAGGGCTGTCTGAACAGTCAGATTAAGCCTAAAGCGCTGAAGCAAATATGCGAGTTGTCAGACAAAACAG
AAGCATTTTTAGCAAAAGCCTCCGAAAAGATGAAGCTGTCCCACCGAGCTTATCACCGGACTCTGCGTTTAGCCCGAACC
ATTGCTGATTTAGCTGATAGTAACATGATAGAGCAACAGCACTTGGCTGAAGCTCTGAACTACCGAGCTCTCGACCGGCT
GATTGATCAAGTGCAAAGCTTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.288

100

0.51
  comM Vibrio cholerae strain A1552

50.097

100

0.502
  comM Vibrio campbellii strain DS40M4

50

99.611

0.498
  comM Glaesserella parasuis strain SC1401

49.027

100

0.49
  comM Legionella pneumophila str. Paris

45.635

98.054

0.447
  comM Legionella pneumophila strain ERS1305867

45.635

98.054

0.447
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.553

100

0.416