Detailed information NTG0911602

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ABVR74_RS00365
• Genome accession: NZ_CP159484
• Coordinates: 71179..72180 (+)
• Length: 333 a.a.
• NCBI ID: WP_003131994.1
• Uniprot ID: Q9CDL3
• Organism: Lactococcus lactis subsp. lactis strain CBA3648
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 66179..77180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVR74_RS00350 (ABVR74_00350)	-	67551..68246 (+)	696	WP_010906384.1	hypothetical protein	-
ABVR74_RS00355 (ABVR74_00355)	hexB	68376..70346 (+)	1971	WP_058223262.1	DNA mismatch repair endonuclease MutL	Machinery gene
ABVR74_RS00360 (ABVR74_00360)	ruvA	70459..71052 (+)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
ABVR74_RS00365 (ABVR74_00365)	ruvB	71179..72180 (+)	1002	WP_003131994.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ABVR74_RS00370 (ABVR74_00370)	-	72317..73201 (+)	885	WP_012898698.1	XRE/MutR family transcriptional regulator	-
ABVR74_RS00375 (ABVR74_00375)	-	73778..74962 (+)	1185	WP_098397372.1	ABC transporter permease	-
ABVR74_RS00380 (ABVR74_00380)	-	74962..75579 (+)	618	WP_353891720.1	ABC transporter ATP-binding protein	-
ABVR74_RS00385 (ABVR74_00385)	-	75991..76428 (+)	438	WP_098397370.1	low molecular weight protein-tyrosine-phosphatase	-
ABVR74_RS00390 (ABVR74_00390)	-	76529..76894 (+)	366	WP_003131985.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37633.17 Da
• Isoelectric Point: 4.5825

>NTDB_id=911602 ABVR74_RS00365 WP_003131994.1 71179..72180(+) (ruvB) [Lactococcus lactis subsp. lactis strain CBA3648]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=911602 ABVR74_RS00365 WP_003131994.1 71179..72180(+) (ruvB) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGGGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTGGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAACATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGTTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: Q9CDL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48