Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U0450_RS09100 Genome accession   NZ_CP139863
Coordinates   1758608..1759078 (+) Length   156 a.a.
NCBI ID   WP_000609607.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1753608..1764078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS09070 - 1753892..1754440 (-) 549 WP_000039614.1 NADPH-dependent FMN reductase -
  U0450_RS09075 - 1754761..1755249 (+) 489 WP_000747254.1 DUF5590 domain-containing protein -
  U0450_RS09080 - 1755246..1756433 (+) 1188 WP_000777794.1 pyridoxal phosphate-dependent aminotransferase -
  U0450_RS09085 - 1756426..1756791 (+) 366 WP_000565220.1 VOC family protein -
  U0450_RS09090 asnS 1756810..1758153 (+) 1344 WP_000167151.1 asparagine--tRNA ligase -
  U0450_RS09095 rpsF 1758306..1758596 (+) 291 WP_322396515.1 30S ribosomal protein S6 -
  U0450_RS09100 ssbA 1758608..1759078 (+) 471 WP_000609607.1 single-stranded DNA-binding protein SsbA Machinery gene
  U0450_RS09105 rpsR 1759110..1759349 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  U0450_RS09110 - 1759644..1761044 (+) 1401 WP_000339024.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  U0450_RS09115 - 1761046..1761405 (+) 360 WP_000689600.1 S1 RNA-binding domain-containing protein -
  U0450_RS09120 - 1761459..1762208 (+) 750 WP_000390784.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U0450_RS09125 - 1762198..1762497 (+) 300 WP_000349601.1 GIY-YIG nuclease family protein -
  U0450_RS09130 - 1762568..1763503 (+) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17351.21 Da        Isoelectric Point: 5.2065

>NTDB_id=911601 U0450_RS09100 WP_000609607.1 1758608..1759078(+) (ssbA) [Streptococcus pneumoniae strain 15P2112]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=911601 U0450_RS09100 WP_000609607.1 1758608..1759078(+) (ssbA) [Streptococcus pneumoniae strain 15P2112]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365