Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   U0447_RS09975 Genome accession   NZ_CP139861
Coordinates   1923025..1923978 (+) Length   317 a.a.
NCBI ID   WP_288165834.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918025..1928978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS09950 rpmG 1918768..1918917 (+) 150 WP_001809104.1 50S ribosomal protein L33 -
  U0447_RS09955 secG 1918957..1919190 (+) 234 WP_000282517.1 preprotein translocase subunit SecG -
  U0447_RS09960 rnr 1919292..1921646 (+) 2355 WP_288165833.1 ribonuclease R -
  U0447_RS09965 smpB 1921609..1922076 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  U0447_RS09970 tehB 1922092..1922952 (+) 861 WP_000413763.1 SAM-dependent methyltransferase TehB -
  U0447_RS09975 coiA 1923025..1923978 (+) 954 WP_288165834.1 competence protein CoiA Machinery gene
  U0447_RS09980 pepF 1923997..1925799 (+) 1803 WP_081528464.1 oligoendopeptidase F Regulator
  U0447_RS09985 - 1925801..1926514 (+) 714 WP_000230399.1 O-methyltransferase -
  U0447_RS09990 prsA 1926581..1927522 (+) 942 WP_081528463.1 peptidylprolyl isomerase PrsA -
  U0447_RS09995 - 1927641..1927982 (-) 342 Protein_1922 transposase -
  U0447_RS10000 - 1928397..1928492 (+) 96 Protein_1923 IS630 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38285.00 Da        Isoelectric Point: 9.2134

>NTDB_id=911452 U0447_RS09975 WP_288165834.1 1923025..1923978(+) (coiA) [Streptococcus pneumoniae strain 16H2017-2]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFKNESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSLLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQYFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=911452 U0447_RS09975 WP_288165834.1 1923025..1923978(+) (coiA) [Streptococcus pneumoniae strain 16H2017-2]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTAAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCTCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGATATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAGGACTTGACTAGCTATTATCAGTACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.054

100

0.991
  coiA Streptococcus pneumoniae Rx1

98.423

100

0.984
  coiA Streptococcus pneumoniae D39

98.423

100

0.984
  coiA Streptococcus pneumoniae R6

98.423

100

0.984
  coiA Streptococcus mitis NCTC 12261

88.959

100

0.89
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432