Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SUT_RS03435 Genome accession   NZ_AP025331
Coordinates   692496..693434 (+) Length   312 a.a.
NCBI ID   WP_155962630.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 687496..698434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS03420 (GUT183_06360) - 688167..688769 (+) 603 WP_227985557.1 DUF3885 domain-containing protein -
  SUT_RS03425 (GUT183_06370) - 689583..690179 (-) 597 WP_024533046.1 DUF1361 domain-containing protein -
  SUT_RS03430 (GUT183_06380) metG 690431..692434 (+) 2004 WP_237373541.1 methionine--tRNA ligase -
  SUT_RS03435 (GUT183_06390) coiA 692496..693434 (+) 939 WP_155962630.1 competence protein CoiA Machinery gene
  SUT_RS03440 (GUT183_06400) pepF 693507..695309 (+) 1803 WP_237373543.1 oligoendopeptidase F Regulator
  SUT_RS03445 - 695526..695753 (+) 228 WP_227984902.1 hypothetical protein -
  SUT_RS03450 (GUT183_06420) - 695767..696315 (+) 549 WP_024531732.1 DUF6630 family protein -
  SUT_RS03455 (GUT183_06430) - 696393..697112 (+) 720 WP_024531731.1 O-methyltransferase -
  SUT_RS03460 (GUT183_06440) - 697174..698172 (+) 999 WP_155965840.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36306.81 Da        Isoelectric Point: 9.1908

>NTDB_id=91133 SUT_RS03435 WP_155962630.1 692496..693434(+) (coiA) [Streptococcus ruminantium strain GUT-183]
MLVAINENGLLFNLLENPAPQGSFNCPGCGGPVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSYLYNWLIEHNK
VELEKCLPNLGQVADLFVNNHLALEVQCSSLSISRLQERTSSYHKSGFQVLWLLGKDLWLKDRLSKLHKQFLSFSLNMGF
YLWELDDEKQELRLHYLIHEDLRGRVHSLTKRFAFGQGNLLDILRLPFTKQSLSRMTCPIDNHLPQYIAQQLYYKSPKWL
TLQAEAYCQGDNLLTKTALDWYPHIRLPSSAIGFAQIRKNLAPIYQAFDRFYKKTKAQKEQVLYSPAYYCQK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=91133 SUT_RS03435 WP_155962630.1 692496..693434(+) (coiA) [Streptococcus ruminantium strain GUT-183]
ATGCTAGTTGCTATCAATGAAAACGGCTTGTTGTTTAATCTTTTAGAAAATCCTGCGCCGCAAGGCTCATTCAACTGTCC
AGGCTGTGGTGGTCCTGTACGATATAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCTCACGTTACCCTGCGGGATTGTC
ATTACTTCTCCGAGAATGAGTCCGCCCAGCACCTATCGCTCAAGTCTTATCTGTATAACTGGTTGATTGAACACAATAAG
GTAGAGCTTGAAAAATGTTTACCAAACTTGGGACAGGTCGCAGATTTATTTGTCAATAATCATCTGGCCCTAGAAGTCCA
GTGTTCTAGTCTATCTATTTCACGTTTGCAAGAACGAACAAGTTCTTATCATAAGTCAGGTTTTCAGGTATTGTGGCTGC
TAGGAAAAGACCTCTGGCTTAAAGACAGGCTTTCCAAACTACATAAGCAATTTCTCTCCTTCAGTCTTAATATGGGGTTT
TACTTATGGGAATTGGATGATGAAAAGCAGGAATTGCGACTTCATTATCTCATTCATGAAGATCTGCGTGGTAGGGTGCA
TTCCCTGACCAAGAGATTTGCATTTGGTCAGGGAAACCTGTTAGATATTTTGCGGCTACCTTTCACCAAGCAGAGTCTAT
CTAGGATGACCTGTCCGATAGACAATCATCTACCTCAATATATCGCCCAGCAGCTTTATTATAAATCTCCTAAATGGTTG
ACTCTACAGGCTGAAGCTTATTGCCAAGGTGACAATCTACTAACAAAGACCGCTCTGGATTGGTATCCCCACATCCGCCT
TCCTAGCTCTGCCATTGGCTTTGCCCAAATCAGAAAAAATCTAGCTCCTATCTACCAAGCTTTTGATAGATTTTATAAAA
AAACGAAAGCTCAGAAGGAACAAGTCCTGTATTCACCGGCCTACTACTGCCAGAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.962

100

0.51
  coiA Streptococcus pneumoniae TIGR4

50

100

0.5
  coiA Streptococcus pneumoniae Rx1

50

100

0.5
  coiA Streptococcus pneumoniae D39

50

100

0.5
  coiA Streptococcus pneumoniae R6

50

100

0.5
  coiA Lactococcus lactis subsp. cremoris KW2

42.679

100

0.439

Multiple sequence alignment