Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SUT_RS03440 Genome accession   NZ_AP025331
Coordinates   693507..695309 (+) Length   600 a.a.
NCBI ID   WP_237373543.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 688507..700309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS03425 (GUT183_06370) - 689583..690179 (-) 597 WP_024533046.1 DUF1361 domain-containing protein -
  SUT_RS03430 (GUT183_06380) metG 690431..692434 (+) 2004 WP_237373541.1 methionine--tRNA ligase -
  SUT_RS03435 (GUT183_06390) coiA 692496..693434 (+) 939 WP_155962630.1 competence protein CoiA Machinery gene
  SUT_RS03440 (GUT183_06400) pepF 693507..695309 (+) 1803 WP_237373543.1 oligoendopeptidase F Regulator
  SUT_RS03445 - 695526..695753 (+) 228 WP_227984902.1 hypothetical protein -
  SUT_RS03450 (GUT183_06420) - 695767..696315 (+) 549 WP_024531732.1 DUF6630 family protein -
  SUT_RS03455 (GUT183_06430) - 696393..697112 (+) 720 WP_024531731.1 O-methyltransferase -
  SUT_RS03460 (GUT183_06440) - 697174..698172 (+) 999 WP_155965840.1 peptidylprolyl isomerase -
  SUT_RS03465 - 698373..698857 (+) 485 Protein_640 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69442.75 Da        Isoelectric Point: 4.6751

>NTDB_id=91134 SUT_RS03440 WP_237373543.1 693507..695309(+) (pepF) [Streptococcus ruminantium strain GUT-183]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEEYIALQAETEKTKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAISLYSAFSQAFAFYEPEFMAITEEQLTAFKTKEPALIQYNHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGNLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALAANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYAPLSDFSTKISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMFTLIHETGHSLHSMLTRRT
QPYVYGHYTLFLAEIASTTNENLLTEKLLAEVKDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGKMNEKYYGLSAEDNPEIQYEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTREDYLNDAFKVFEARLEELEELVERGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=91134 SUT_RS03440 WP_237373543.1 693507..695309(+) (pepF) [Streptococcus ruminantium strain GUT-183]
ATGTCAAAACAACGTCATGAGATTGAAGAAAAATATCAGTGGGATCTAACCACTATTTTCCCAACCGATGAAGCTTGGGA
GGAAGAATATATTGCCCTACAGGCTGAAACAGAAAAGACAAAAGATTTTGCAGGACATTTGTTGGACTCTGCTAAAAGTC
TTTTAGAGATTAGCGAGACCCAGCTTGGTTTGATGCGCCGTATCGAAAAACTGTATGTTTATGCTTCTATGAAGAACGAC
CAAGATACTCGTGAAGGGAAATACCAAGAATTTCAAGCCAAAGCTATCAGCCTCTATTCTGCTTTTTCACAAGCCTTTGC
CTTTTACGAGCCAGAATTTATGGCGATTACAGAAGAGCAGTTGACAGCTTTCAAGACTAAGGAACCAGCCTTGATTCAAT
ACAATCACCAATTTGAAAAGCTGTTAGCCGCAAAAGATCATGTTCTATCTCAAGAAGTAGAAGAAGTTCTAGCTGCAACC
AGTGAAATTTTTGAATCCCCAGCAGAAACCTTCTCGGTCTTAGATAATGCCAGTTTGCGTTTCCCTGAAATTGCAGATGA
AGATGGCAATCTAGTGCCTCTGTCGCACGGTAATTACATCCATTTTATGGAGTCTAAAAATCGTGAAGTTCGTCAGGAAG
CCTATGAAGCCATGTACGGAACCTATGAGCAATTCCAGCATACCTATGCAAAGACACTTCAGTCCAATGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGTAAGTACGATTCGGCTCGCCACGCAGCACTTGCAGCTAATTTTATTCCAGAATCTGTCTA
TGATACATTGGTATCAGCTGTCAATAAGCACCTGCCTCTCCTGCATCGTTATATCAACTTGCGTAAGAAACTCTTGGGAA
TTGATGACCTCAAGATGTACGACATGTACGCCCCCTTGTCCGATTTTAGTACAAAGATTTCTTATGAGGATGCACTCAAA
AAATGTCAAGAAACGTTGGAAATTTTTGGTGAAGACTACTCAACTATTGTTAAAGAAGCCTTTGAAAATCGCTGGATTGA
TGTTCATGTTAACGAAGGAAAGCGTTCAGGAGCTTATTCAGGTGGCGCCTATGATACCAATGCCTTCATGTTGCTCAACT
GGCAGGACAACTTGGATAACATGTTTACTTTGATTCACGAAACAGGTCACTCCCTTCATTCCATGCTGACTCGTAGAACC
CAGCCTTATGTCTATGGACATTACACTCTCTTCTTGGCAGAAATTGCTTCAACTACCAACGAGAACCTCCTCACTGAAAA
GCTCTTGGCAGAAGTGAAGGACGATAAGGAGCGCTTTGCTATCCTCAACCACTATTTGGATGGTTTCCGTGGCACGGTAT
TCCGTCAGACTCAATTTGCTGAGTTTGAACAAGCTATCTATAAAGCCGACCAAGAAGGGCAGGTTTTGACCGCTGACTTC
CTCAATGAGTTGTACGGTAAGATGAATGAGAAATATTATGGACTTTCTGCGGAAGACAATCCTGAAATCCAGTATGAATG
GGCACGCATTCCGCACTTCTATTACAATTTCTATGTTTACCAGTATGCGACGGGCTTTGCAGCGGCATCAGCCCTTGCCA
ATAAGATTGTCAATGGAAGCCCAGAAGATAAGGAAAACTACCTAAACTATCTGAAGGCTGGTAGTTCCGACTATTCTCTC
AATGTTATCGCCAAAGCTGGTGTGGATATGACTAGAGAAGACTACCTAAATGACGCTTTCAAGGTCTTTGAAGCTCGCTT
GGAGGAACTTGAAGAGCTTGTCGAAAGAGGAGTACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment