Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U0543_RS12740 Genome accession   NZ_CP139836
Coordinates   2654157..2654594 (+) Length   145 a.a.
NCBI ID   WP_000993715.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2649157..2659594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12720 (U0543_12720) - 2650550..2651437 (+) 888 WP_001017320.1 metal-dependent hydrolase -
  U0543_RS12725 (U0543_12725) - 2651568..2652158 (+) 591 WP_000846931.1 LemA family protein -
  U0543_RS12730 (U0543_12730) - 2652180..2653259 (+) 1080 WP_029424118.1 YgcG family protein -
  U0543_RS12735 (U0543_12735) - 2653253..2653813 (+) 561 WP_004839782.1 TPM domain-containing protein -
  U0543_RS12740 (U0543_12740) pilA 2654157..2654594 (+) 438 WP_000993715.1 pilin Machinery gene
  U0543_RS12745 (U0543_12745) - 2654652..2655962 (+) 1311 WP_029424119.1 O-antigen ligase -
  U0543_RS12750 (U0543_12750) - 2656069..2657697 (+) 1629 WP_001195765.1 PglL family O-oligosaccharyltransferase -
  U0543_RS12755 (U0543_12755) bfr 2657738..2658202 (-) 465 WP_000678123.1 bacterioferritin -
  U0543_RS12760 (U0543_12760) - 2658447..2658641 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  U0543_RS12765 (U0543_12765) - 2658851..2659234 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15022.14 Da        Isoelectric Point: 8.1097

>NTDB_id=911211 U0543_RS12740 WP_000993715.1 2654157..2654594(+) (pilA) [Acinetobacter baumannii strain B84]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=911211 U0543_RS12740 WP_000993715.1 2654157..2654594(+) (pilA) [Acinetobacter baumannii strain B84]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

52.414

100

0.524
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.218

100

0.448
  pilA Vibrio cholerae strain A1552

44.218

100

0.448
  pilA Vibrio cholerae C6706

44.218

100

0.448
  pilA Pseudomonas aeruginosa PAK

41.558

100

0.441
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.357

98.621

0.428
  comP Acinetobacter baylyi ADP1

40

100

0.414
  pilA Haemophilus influenzae 86-028NP

38.816

100

0.407
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.845

97.931

0.4
  pilA Vibrio parahaemolyticus RIMD 2210633

43.651

86.897

0.379