Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   U0543_RS12680 Genome accession   NZ_CP139836
Coordinates   2637854..2638594 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2632854..2643594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12665 (U0543_12665) ponA 2633441..2635996 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  U0543_RS12670 (U0543_12670) pilM 2636158..2637216 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  U0543_RS12675 (U0543_12675) pilN 2637216..2637857 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  U0543_RS12680 (U0543_12680) pilO 2637854..2638594 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U0543_RS12685 (U0543_12685) pilP 2638605..2639132 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  U0543_RS12690 (U0543_12690) pilQ 2639200..2641364 (+) 2165 Protein_2479 type IV pilus secretin PilQ -
  U0543_RS12695 (U0543_12695) aroK 2641376..2641945 (+) 570 WP_000643712.1 shikimate kinase AroK -
  U0543_RS12700 (U0543_12700) aroB 2641974..2643056 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=911209 U0543_RS12680 WP_000076101.1 2637854..2638594(+) (pilO) [Acinetobacter baumannii strain B84]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=911209 U0543_RS12680 WP_000076101.1 2637854..2638594(+) (pilO) [Acinetobacter baumannii strain B84]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683