Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U0543_RS12675 Genome accession   NZ_CP139836
Coordinates   2637216..2637857 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2632216..2642857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12655 (U0543_12655) - 2632264..2632596 (+) 333 WP_000169602.1 hypothetical protein -
  U0543_RS12660 (U0543_12660) - 2632599..2633423 (+) 825 WP_086221410.1 putative RNA methyltransferase -
  U0543_RS12665 (U0543_12665) ponA 2633441..2635996 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  U0543_RS12670 (U0543_12670) pilM 2636158..2637216 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  U0543_RS12675 (U0543_12675) pilN 2637216..2637857 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  U0543_RS12680 (U0543_12680) pilO 2637854..2638594 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U0543_RS12685 (U0543_12685) pilP 2638605..2639132 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  U0543_RS12690 (U0543_12690) pilQ 2639200..2641364 (+) 2165 Protein_2479 type IV pilus secretin PilQ -
  U0543_RS12695 (U0543_12695) aroK 2641376..2641945 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=911208 U0543_RS12675 WP_000201227.1 2637216..2637857(+) (pilN) [Acinetobacter baumannii strain B84]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=911208 U0543_RS12675 WP_000201227.1 2637216..2637857(+) (pilN) [Acinetobacter baumannii strain B84]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709