Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   U0543_RS12685 Genome accession   NZ_CP139836
Coordinates   2638605..2639132 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2633605..2644132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12670 (U0543_12670) pilM 2636158..2637216 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  U0543_RS12675 (U0543_12675) pilN 2637216..2637857 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  U0543_RS12680 (U0543_12680) pilO 2637854..2638594 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  U0543_RS12685 (U0543_12685) pilP 2638605..2639132 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  U0543_RS12690 (U0543_12690) pilQ 2639200..2641364 (+) 2165 Protein_2479 type IV pilus secretin PilQ -
  U0543_RS12695 (U0543_12695) aroK 2641376..2641945 (+) 570 WP_000643712.1 shikimate kinase AroK -
  U0543_RS12700 (U0543_12700) aroB 2641974..2643056 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  U0543_RS12705 (U0543_12705) - 2643072..2643947 (+) 876 WP_029424116.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=911210 U0543_RS12685 WP_000695065.1 2638605..2639132(+) (pilP) [Acinetobacter baumannii strain B84]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=911210 U0543_RS12685 WP_000695065.1 2638605..2639132(+) (pilP) [Acinetobacter baumannii strain B84]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714