Detailed information NTG0911188

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ABQ274_RS09690
• Genome accession: NZ_CP159281
• Coordinates: 1953208..1954209 (+)
• Length: 333 a.a.
• NCBI ID: WP_003131994.1
• Uniprot ID: Q9CDL3
• Organism: Lactococcus lactis strain FNZ339
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1948208..1959209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQ274_RS09675 (ABQ274_09675)	-	1949582..1950277 (+)	696	WP_010906384.1	hypothetical protein	-
ABQ274_RS09680 (ABQ274_09680)	hexB	1950406..1952376 (+)	1971	WP_353726867.1	DNA mismatch repair endonuclease MutL	Machinery gene
ABQ274_RS09685 (ABQ274_09685)	ruvA	1952489..1953082 (+)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
ABQ274_RS09690 (ABQ274_09690)	ruvB	1953208..1954209 (+)	1002	WP_003131994.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ABQ274_RS09695 (ABQ274_09695)	-	1954346..1955230 (+)	885	WP_012898698.1	XRE/MutR family transcriptional regulator	-
ABQ274_RS09700 (ABQ274_09700)	-	1955807..1956991 (+)	1185	WP_010906380.1	ABC transporter permease	-
ABQ274_RS09705 (ABQ274_09705)	-	1956988..1957605 (+)	618	WP_023164702.1	AAA family ATPase	-
ABQ274_RS09710 (ABQ274_09710)	-	1957710..1957874 (+)	165	WP_003131988.1	hypothetical protein	-
ABQ274_RS09715 (ABQ274_09715)	-	1958018..1958455 (+)	438	WP_353726868.1	low molecular weight protein-tyrosine-phosphatase	-
ABQ274_RS09720 (ABQ274_09720)	-	1958556..1958921 (+)	366	WP_003131985.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37633.17 Da
• Isoelectric Point: 4.5825

>NTDB_id=911188 ABQ274_RS09690 WP_003131994.1 1953208..1954209(+) (ruvB) [Lactococcus lactis strain FNZ339]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=911188 ABQ274_RS09690 WP_003131994.1 1953208..1954209(+) (ruvB) [Lactococcus lactis strain FNZ339]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATATTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGCCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCAATTTTGAATGAATTGGAACCTGGCGATGTACT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCACGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGGTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: Q9CDL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48