Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SOM08_RS00905 Genome accession   NZ_CP139793
Coordinates   184461..185993 (-) Length   510 a.a.
NCBI ID   WP_322469865.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 179461..190993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS00895 (SOM08_00895) metH 180096..182840 (+) 2745 WP_116959266.1 methionine synthase -
  SOM08_RS00900 (SOM08_00900) - 182905..184464 (-) 1560 WP_322469864.1 hypothetical protein -
  SOM08_RS00905 (SOM08_00905) comM 184461..185993 (-) 1533 WP_322469865.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SOM08_RS00910 (SOM08_00910) - 186282..186620 (+) 339 WP_070400158.1 P-II family nitrogen regulator -
  SOM08_RS00915 (SOM08_00915) amt 186657..188048 (+) 1392 WP_322469866.1 ammonium transporter -
  SOM08_RS00920 (SOM08_00920) - 188205..188441 (+) 237 WP_116958970.1 hypothetical protein -
  SOM08_RS00925 (SOM08_00925) - 188471..189958 (-) 1488 WP_322469867.1 M81 family metallopeptidase -
  SOM08_RS00930 (SOM08_00930) - 189958..190971 (-) 1014 WP_322469868.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53600.45 Da        Isoelectric Point: 9.6188

>NTDB_id=911036 SOM08_RS00905 WP_322469865.1 184461..185993(-) (comM) [Hydrogenophaga sp. SNF1]
MALAHVHSRALQGLAARPVSVEVHLANGLPSFTLVGLADTEVKEARERVRAAIANSGLEFPHSQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIEAEPLARGVYAGELSLGGELRPVRGALAMALALAQDAAPRTLVLPPGSAEEAALVPGAHVVRA
RHLIDVVARLRREQPAPPDDAGWARLEPRDGAPAPPGGPDLADVKGQVAARRALEIAAAGGHSRLLVGPPGAGKSMLAQR
LGGLLPPMATDEALQAAAVASLAGRFDPARWGERPFCAPHHSASAVALVGGGSPPRPGEISLAHQGVLFLDELPEFARHA
LEALREPLETGRIRVSRAAQQAEFPARFQLVAAMNPCPCGYRGHPVRACRCTPEQVQRYQGRLSGPLLDRIDLQVEVPAL
PSEQLLQGPPGEGSAGVRSRVVAARERALRRQGLPNRALAGGALEEHARAEPAALKFLHAAAVRLAWSGRGTHRALRVAR
TIADLAGHERVVAADVAEAVQYRRVLEAFA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=911036 SOM08_RS00905 WP_322469865.1 184461..185993(-) (comM) [Hydrogenophaga sp. SNF1]
ATGGCGCTGGCGCATGTGCACAGCCGCGCGCTGCAGGGGCTGGCCGCCCGGCCCGTGAGCGTGGAAGTCCACCTGGCCAA
CGGCCTGCCCAGCTTCACGCTGGTGGGCCTGGCCGACACCGAGGTGAAGGAAGCGCGCGAGCGGGTGCGCGCGGCCATCG
CCAACAGCGGCCTGGAGTTCCCGCACAGCCAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGTTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGGCAGATCGAGGCCGAACCCCTGGCGCGCGGCGTGTA
CGCGGGCGAGCTGTCCCTGGGCGGCGAACTGCGCCCGGTGCGCGGCGCGCTGGCCATGGCGCTGGCCCTCGCGCAGGACG
CGGCCCCCCGCACCCTGGTGCTGCCACCGGGCAGCGCCGAAGAGGCCGCCCTGGTGCCCGGCGCCCATGTGGTGCGCGCG
CGCCACCTCATCGACGTGGTGGCGCGCCTGCGCCGCGAGCAGCCGGCCCCGCCGGACGACGCGGGCTGGGCGCGGCTGGA
GCCGCGCGACGGCGCCCCGGCGCCGCCCGGGGGACCCGACCTTGCCGACGTGAAAGGCCAGGTGGCCGCGCGCCGCGCGC
TGGAGATCGCGGCCGCCGGCGGCCACAGCCGGTTGCTGGTGGGGCCGCCGGGCGCCGGCAAGTCCATGCTGGCGCAGCGC
CTGGGCGGGCTGCTGCCGCCCATGGCCACCGACGAGGCCCTGCAGGCCGCGGCCGTGGCCTCGCTGGCCGGGCGCTTCGA
TCCCGCGCGCTGGGGCGAACGGCCCTTCTGCGCGCCGCACCACAGCGCCTCCGCCGTGGCGCTGGTGGGCGGGGGCTCGC
CGCCGCGGCCGGGCGAGATCTCGCTCGCCCACCAGGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGCGCGCCACGCG
CTGGAGGCGCTGCGCGAGCCGCTGGAGACCGGCCGCATCCGCGTCTCGCGCGCGGCGCAGCAGGCCGAATTCCCCGCGCG
TTTCCAGCTCGTGGCCGCCATGAACCCCTGCCCCTGCGGCTACCGCGGCCACCCGGTGCGGGCCTGCCGCTGCACGCCCG
AGCAAGTGCAACGCTACCAGGGCCGGCTCAGCGGCCCGCTGCTCGACCGCATCGACCTGCAGGTGGAGGTGCCCGCGCTG
CCCAGCGAGCAGCTGCTGCAGGGCCCGCCCGGCGAGGGCAGCGCCGGGGTGCGCTCGCGCGTGGTGGCCGCCCGCGAGCG
CGCGCTGCGGCGCCAGGGCCTGCCCAACCGCGCGCTCGCGGGCGGCGCGCTCGAGGAGCACGCGCGCGCCGAGCCGGCGG
CGCTGAAGTTCCTGCACGCGGCGGCCGTGCGCCTGGCCTGGAGCGGGCGCGGCACGCACCGCGCGCTGCGCGTGGCGCGC
ACCATCGCCGACCTGGCCGGGCACGAGCGCGTGGTTGCGGCCGACGTGGCGGAGGCGGTGCAGTACCGGCGCGTGCTGGA
GGCGTTCGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.287

99.02

0.508
  comM Vibrio campbellii strain DS40M4

50.491

99.804

0.504
  comM Haemophilus influenzae Rd KW20

50

99.608

0.498
  comM Glaesserella parasuis strain SC1401

48.718

99.412

0.484
  comM Legionella pneumophila str. Paris

47.741

99.804

0.476
  comM Legionella pneumophila strain ERS1305867

47.741

99.804

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.715

100

0.42