Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PsasTeo6_RS25785 Genome accession   NZ_CP139776
Coordinates   5637689..5639179 (+) Length   496 a.a.
NCBI ID   WP_322265071.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain Teo6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5632689..5644179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PsasTeo6_RS25755 (PsasTeo6_41248) - 5633100..5633795 (+) 696 WP_013974747.1 HAD family hydrolase -
  PsasTeo6_RS25760 (PsasTeo6_41256) sutA 5634027..5634356 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  PsasTeo6_RS25765 (PsasTeo6_41264) - 5634787..5636118 (-) 1332 WP_015272254.1 ammonium transporter -
  PsasTeo6_RS25770 (PsasTeo6_41272) glnK 5636165..5636503 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PsasTeo6_RS25775 (PsasTeo6_41280) - 5636906..5637172 (+) 267 WP_015272255.1 accessory factor UbiK family protein -
  PsasTeo6_RS25780 (PsasTeo6_41288) - 5637173..5637526 (+) 354 WP_023662910.1 gamma-glutamylcyclotransferase family protein -
  PsasTeo6_RS25785 (PsasTeo6_41296) comM 5637689..5639179 (+) 1491 WP_322265071.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PsasTeo6_RS25790 (PsasTeo6_41312) - 5639307..5639675 (-) 369 WP_177328632.1 response regulator transcription factor -
  PsasTeo6_RS25795 (PsasTeo6_41320) - 5639672..5640664 (-) 993 WP_322265072.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52782.49 Da        Isoelectric Point: 7.5221

>NTDB_id=910919 PsasTeo6_RS25785 WP_322265071.1 5637689..5639179(+) (comM) [Pseudomonas asiatica strain Teo6]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTASLAEIECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRCHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGNQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=910919 PsasTeo6_RS25785 WP_322265071.1 5637689..5639179(+) (comM) [Pseudomonas asiatica strain Teo6]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCAATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCTCCCTTGCCGAGATCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGTTGCCCGCAGCACTGGCGGCACGCGAAGCAGGCC
GGGCACTGGTGGTGCCGCGGGAGAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCAGTGGGGCACCTG
CTGGAACTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCACCGTATGCCGCCAACGGCCTGATCCTGCAGCAACGCCC
GTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TTTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTTGCCAGCCGCTTGCCGGGGCTGCTGCCACCACTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATACAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCATCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTACCTGAGTTCGAGCGTCGCGTGCTGGAAGTGTTGCGCGAACCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCACGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGTAGCACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCATTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCATT
TCTCGACCTTGAGGGGTTGCGCTGCCATTGTGGGTTGGCGGCGGCGGACCAGGCCTGGTTGGAGGGGGCCTGTGAGCGGC
TGACCCTGTCGTTACGTGCGGCTCACCGGTTACTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAACCAGGCAATT
GGCCGGGCGCATCTGGCTGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

54.092

100

0.546
  comM Legionella pneumophila str. Paris

49.194

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474