Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R6I57_RS23540 Genome accession   NZ_CP139745
Coordinates   4902543..4904063 (+) Length   506 a.a.
NCBI ID   WP_003841173.1    Uniprot ID   -
Organism   Citrobacter freundii isolate FELIX_MS432     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4897543..4909063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I57_RS23520 (R6I57_23520) - 4899099..4900028 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  R6I57_RS23525 (R6I57_23525) ilvM 4900046..4900309 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  R6I57_RS23530 (R6I57_23530) ilvG 4900306..4901952 (-) 1647 WP_003841174.1 acetolactate synthase 2 catalytic subunit -
  R6I57_RS23535 (R6I57_23535) ilvL 4902092..4902190 (-) 99 WP_001311244.1 ilv operon leader peptide -
  R6I57_RS23540 (R6I57_23540) comM 4902543..4904063 (+) 1521 WP_003841173.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R6I57_RS23545 (R6I57_23545) maoP 4904088..4904426 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  R6I57_RS23550 (R6I57_23550) hdfR 4904533..4905378 (+) 846 WP_085951600.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55035.99 Da        Isoelectric Point: 7.4365

>NTDB_id=910873 R6I57_RS23540 WP_003841173.1 4902543..4904063(+) (comM) [Citrobacter freundii isolate FELIX_MS432]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIQGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFIPCALADDLSDVIGQEQGKRGLELTAAGGHNLILIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIGRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=910873 R6I57_RS23540 WP_003841173.1 4902543..4904063(+) (comM) [Citrobacter freundii isolate FELIX_MS432]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACAGGGTGAAGGGTGCCTCATAGCCGATCATCTA
CAGGCAGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCAGCAGATTTTATCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCA
TACTCATCGGCCCTCCGGGTACGGGTAAGACTATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCCATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGCCAGAACCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGTGATGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTTGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGGCAGATTACTCATTCATTTGCAAAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.937

99.605

0.577
  comM Glaesserella parasuis strain SC1401

57.48

100

0.577
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Haemophilus influenzae Rd KW20

56.751

100

0.573
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.323

100

0.425