Detailed information NTG0910652

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: UM402_RS01030
• Genome accession: NZ_CP139706
• Coordinates: 227512..228393 (+)
• Length: 293 a.a.
• NCBI ID: WP_322295396.1
• Uniprot ID: -
• Organism: Idiomarina sp. OXR-189
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 222512..233393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UM402_RS01005 (UM402_01005)	-	222845..223162 (-)	318	WP_058576590.1	CcdB family protein	-
UM402_RS01010 (UM402_01010)	-	223162..223407 (-)	246	WP_058576591.1	type II toxin-antitoxin system CcdA family antitoxin	-
UM402_RS01015 (UM402_01015)	-	223542..224273 (-)	732	WP_058576592.1	DsbA family protein	-
UM402_RS01020 (UM402_01020)	-	224303..224827 (-)	525	WP_058576593.1	protein disulfide oxidoreductase	-
UM402_RS01025 (UM402_01025)	-	224817..226901 (-)	2085	WP_058576594.1	protein-disulfide reductase DsbD family protein	-
UM402_RS01030 (UM402_01030)	comM	227512..228393 (+)	882	WP_322295396.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
UM402_RS01035 (UM402_01035)	-	228726..230237 (-)	1512	WP_322295397.1	SIR2 family protein	-
UM402_RS01040 (UM402_01040)	-	230617..231063 (+)	447	WP_322295398.1	hypothetical protein	-
UM402_RS01045 (UM402_01045)	-	231124..231252 (+)	129	WP_322295399.1	hypothetical protein	-
UM402_RS01050 (UM402_01050)	-	231441..231704 (-)	264	WP_322295400.1	hypothetical protein	-
UM402_RS01055 (UM402_01055)	-	232156..232452 (-)	297	WP_322295401.1	hypothetical protein	-
UM402_RS01060 (UM402_01060)	-	232826..233155 (-)	330	WP_322295402.1	hypothetical protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31525.20 Da
• Isoelectric Point: 6.8295

>NTDB_id=910652 UM402_RS01030 WP_322295396.1 227512..228393(+) (comM) [Idiomarina sp. OXR-189]
MALARVYTRALIGIHAPEIRVEVDLARGMPGFTMVGMPATTVKEARDRVKTALMNAGFEYPPATRITVNLAPADIPKTGA
RYDLAIAVGILAASGQIPDTILEQAEFYGELALTGELRAVNGLIPALLACREKKRQAFVPIANQQEAGLVREQKSWLAAD
LVSVYEHLHEHQPLRESKPVDWACQAESDEGDLADVVGQEQAKRALLLSAAGKHHLLFVGPPGTGKTMLAQRLSGLLPSL
TEKEAMEIAAVKSVSFDYHGTEALTQREVRSPHHTCTAAALVGGGTVNSHNKF

Nucleotide

• Length: 882 bp

>NTDB_id=910652 UM402_RS01030 WP_322295396.1 227512..228393(+) (comM) [Idiomarina sp. OXR-189]
ATGGCGTTAGCGCGAGTCTATACGAGGGCACTGATAGGTATTCATGCGCCGGAAATTCGGGTTGAAGTGGATCTTGCCCG
GGGGATGCCTGGGTTTACTATGGTTGGCATGCCTGCAACCACGGTTAAGGAGGCGCGCGATCGGGTCAAAACCGCATTAA
TGAACGCAGGGTTTGAATACCCTCCTGCCACACGTATTACGGTGAATTTGGCTCCTGCCGATATACCGAAAACCGGGGCT
CGCTATGACTTAGCCATTGCCGTGGGTATATTGGCTGCGTCAGGTCAAATACCCGATACCATTTTAGAGCAGGCGGAGTT
TTATGGAGAGCTAGCTTTAACCGGTGAACTGCGAGCTGTGAACGGACTCATTCCTGCTTTGTTAGCCTGTCGTGAGAAAA
AGCGACAGGCGTTTGTGCCAATTGCTAATCAGCAGGAAGCGGGATTAGTTCGTGAGCAAAAAAGTTGGTTAGCTGCTGAC
TTGGTCAGTGTGTACGAACATTTACATGAACATCAGCCGCTTCGAGAGTCCAAGCCAGTCGACTGGGCGTGCCAGGCGGA
AAGTGATGAAGGCGATTTAGCCGATGTAGTCGGGCAGGAGCAGGCAAAACGGGCTTTGTTATTGTCCGCTGCGGGTAAGC
ACCATTTGTTATTTGTGGGTCCGCCAGGCACCGGGAAAACCATGCTGGCGCAGCGTTTGAGTGGGCTATTGCCGTCATTG
ACTGAGAAAGAGGCGATGGAAATAGCCGCGGTTAAATCGGTGTCTTTTGACTACCACGGGACAGAGGCATTAACTCAACG
CGAAGTGAGAAGCCCACACCATACGTGCACTGCGGCTGCTTTAGTGGGTGGGGGTACTGTCAATTCGCATAATAAATTCT
AA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-143)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (192-286)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	52.414	98.976	0.519
comM	Vibrio cholerae strain A1552	51.557	98.635	0.509
comM	Vibrio campbellii strain DS40M4	50.694	98.294	0.498
comM	Glaesserella parasuis strain SC1401	49.135	98.635	0.485
comM	Legionella pneumophila str. Paris	46.154	97.611	0.451
comM	Legionella pneumophila strain ERS1305867	46.154	97.611	0.451
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	39.792	98.635	0.392