Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPL95_RS29835 Genome accession   NZ_CP139639
Coordinates   6414705..6416201 (+) Length   498 a.a.
NCBI ID   WP_122687024.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain Pcan-CK-23     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6409705..6421201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPL95_RS29805 (SPL95_29805) sutA 6409852..6410178 (-) 327 WP_015886504.1 transcriptional regulator SutA -
  SPL95_RS29810 (SPL95_29810) - 6410282..6410707 (-) 426 WP_010567185.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SPL95_RS29815 (SPL95_29815) - 6410919..6412256 (-) 1338 WP_016975881.1 ammonium transporter -
  SPL95_RS29820 (SPL95_29820) glnK 6412291..6412629 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  SPL95_RS29825 (SPL95_29825) - 6413052..6413312 (+) 261 WP_010207460.1 accessory factor UbiK family protein -
  SPL95_RS29830 (SPL95_29830) - 6413330..6414610 (+) 1281 WP_305383249.1 MFS transporter -
  SPL95_RS29835 (SPL95_29835) comM 6414705..6416201 (+) 1497 WP_122687024.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SPL95_RS29840 (SPL95_29840) - 6416198..6416782 (-) 585 WP_068935988.1 TetR/AcrR family transcriptional regulator -
  SPL95_RS29845 (SPL95_29845) - 6416894..6417808 (+) 915 WP_323988399.1 ABC transporter six-transmembrane domain-containing protein -
  SPL95_RS29850 (SPL95_29850) - 6417812..6419788 (-) 1977 WP_122729850.1 methyl-accepting chemotaxis protein -
  SPL95_RS29855 (SPL95_29855) - 6419966..6420886 (-) 921 WP_028618456.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53292.52 Da        Isoelectric Point: 8.6461

>NTDB_id=910405 SPL95_RS29835 WP_122687024.1 6414705..6416201(+) (comM) [Pseudomonas canadensis strain Pcan-CK-23]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASAQVPALTLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHQPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTRQA
GDNTAEASARVAQARDRQQQRQGCANAFLDLPGLRKHCKLAKVDECWLENACERLTLSLRAAHRLLKVARTLADLEHAGS
ITRAHLAEALQYRPAAVG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=910405 SPL95_RS29835 WP_122687024.1 6414705..6416201(+) (comM) [Pseudomonas canadensis strain Pcan-CK-23]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGAAGCCCCCGCCGTCACCGTCGAAGTGCATATGGCCAA
TGGTTTGCCATCCCTGACGCTGGTGGGCTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATTCTGCGCTGCAATACCCTGCCCGCCGCATCACGCTGAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCCTGGGAATCCTGGCGGCCAGCGCGCAGGTGCCGGCGTTGACGCTCGACGACGTGGAATGCCT
GGGAGAACTGGCACTGTCCGGCGAAGTGCGGGCAGTGAAAGGCGTGCTGCCGGCGGCCTTGGCGGCACGCAAGGCCGGAC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAAGCTTGCCTGGCGTCGGGGTTGAAAGTGATCGCCGTGGATCATTTG
CTGCAGGTGGTGGCGCACCTGAACGGACATCAGCCTATCGAGCCCTACAAATCCGACGGTTTGCTGTACCTGAACAAGCC
TTACCCGGACTTGAGCGAAGTACAGGGCCAGCTCGCTGCCAAGCGCGCACTGCTGATTGCCGCGGCGGGGGCGCATAACC
TGCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACATTGCTCGCCAGCCGGCTGCCGGGTTTGTTGCCACCGTTGAGTGAG
CAGGAAGCGTTGGAAGTGGCGGCGATTCAGTCGGTTGTCAGCCTGGCGCCCTTGAGCCACTGGCCCCACAGGCCGTTTCG
CCAGCCGCACCATTCAGCGTCGGGCCCGGCGTTGGTAGGGGGCGGGTCAAAGCCGCAACCGGGAGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCAGAGTTCGACCGCAAAGTGTTGGAGGTGCTGCGCGAGCCACTGGAATCA
GGGCATATCGTAATTTCCCGTGCCCGCGACCGCGTGAGCTTCCCTGCACGCTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCTTGCGGGTACATGGGCGAACCCAGCGGACGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CTGGGCCACTGCTGGACCGCATCGACTTGCACCTCACTGTGGCGCGAGAAACCACCGCGTTGAATCCTACCCGGCAGGCG
GGCGATAACACGGCCGAGGCCTCGGCACGGGTCGCCCAGGCCCGCGATCGCCAACAGCAACGCCAAGGCTGTGCGAATGC
TTTCCTTGATCTGCCGGGGCTACGCAAGCACTGCAAGCTGGCGAAGGTCGACGAATGCTGGCTGGAAAACGCCTGTGAAC
GGCTGACGCTTTCCCTGCGCGCAGCCCATCGGCTGCTCAAAGTGGCGCGTACATTAGCCGACCTTGAGCACGCCGGTAGC
ATCACCCGGGCGCATCTGGCGGAAGCGTTGCAGTATCGGCCCGCGGCTGTTGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.97

99.398

0.566
  comM Glaesserella parasuis strain SC1401

56.287

100

0.566
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.024

100

0.476