Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU49_RS21900 Genome accession   NZ_AP025282
Coordinates   4824369..4825880 (-) Length   503 a.a.
NCBI ID   WP_261842641.1    Uniprot ID   -
Organism   Aliamphritea ceti strain KCTC 42154     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4819369..4830880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU49_RS21885 - 4819735..4820169 (+) 435 WP_261842638.1 cytochrome c5 family protein -
  OCU49_RS21890 rep 4820270..4822285 (-) 2016 WP_261842639.1 DNA helicase Rep -
  OCU49_RS21895 - 4822629..4824365 (+) 1737 WP_261842640.1 bifunctional diguanylate cyclase/phosphodiesterase -
  OCU49_RS21900 comM 4824369..4825880 (-) 1512 WP_261842641.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU49_RS21905 - 4825957..4826214 (-) 258 WP_261842642.1 accessory factor UbiK family protein -
  OCU49_RS21910 - 4826516..4827775 (+) 1260 WP_261842643.1 ammonium transporter -
  OCU49_RS21915 glnK 4827961..4828299 (+) 339 WP_261842644.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53609.55 Da        Isoelectric Point: 6.5658

>NTDB_id=91028 OCU49_RS21900 WP_261842641.1 4824369..4825880(-) (comM) [Aliamphritea ceti strain KCTC 42154]
MALAIIHTRAQLGVTAPLVNVEIHLSGGLPCFAIVGLPEAAVKESRERVRSALLNSGFDFPARRITVNLAPADLPKEGGR
YDLAIALGILLASDQLKVKQLQAYEFMAELGLGGELRPVRGVLPAAIACQEAGNACWVAQGNVAEAMLVDDLTVFSDSDL
LSVCNSLSDEHRCSPTNAESTTVVSTNVADMADIKGQHQARRGLEIAAAGGHNILFSGPPGSGKSMLASRLPGLLPQLSR
KDLLETAAIYSVAGMDSSSLLAGSRPFRAPHHTASSVALVGGGSKPRPGEISLAHQGVLFLDELPEFPRTVLEVLREPLE
SGKVEISRVAQQLSFPARFQLVAAMNPCPCGYLGDSDGRCRCTPDQISRYQHKISGPLLDRIDLFSWVPGLPAEQLMARG
GGESSDDVRGRVMLAHELQMQRQGCRNAELITADLEVYCALGGVEQALLINAMQRLKLSARAAHRVLKVARTVADMNQSE
NINQTALLEALGFRFNGVQVVAG

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=91028 OCU49_RS21900 WP_261842641.1 4824369..4825880(-) (comM) [Aliamphritea ceti strain KCTC 42154]
ATGGCGCTGGCAATTATTCATACTCGGGCACAGTTGGGTGTCACTGCACCATTGGTCAATGTGGAAATACATCTTTCCGG
TGGCTTACCTTGTTTTGCAATCGTTGGGCTTCCCGAAGCGGCAGTTAAGGAAAGCCGGGAAAGAGTACGCAGTGCGTTAC
TTAATTCTGGTTTTGATTTTCCTGCCCGGCGGATCACTGTGAACCTTGCACCGGCGGATTTACCTAAAGAGGGTGGTCGC
TATGATTTAGCGATTGCGTTAGGAATATTACTCGCCAGTGATCAGCTGAAAGTAAAGCAACTTCAGGCGTATGAGTTTAT
GGCTGAACTGGGGCTAGGTGGTGAGTTGCGACCGGTTCGGGGTGTTTTACCAGCCGCTATTGCTTGTCAGGAGGCGGGTA
ACGCTTGTTGGGTTGCCCAGGGAAATGTTGCTGAAGCTATGTTGGTTGATGATTTGACCGTCTTTAGTGATTCAGATTTA
CTCAGTGTTTGTAATAGTCTGAGTGATGAGCATAGATGTTCTCCTACAAATGCTGAATCGACCACTGTAGTCAGTACGAA
TGTGGCCGATATGGCTGATATCAAAGGCCAGCATCAGGCGCGTCGCGGATTAGAAATAGCCGCTGCTGGCGGGCATAACA
TTCTTTTTTCTGGCCCTCCGGGTAGCGGAAAAAGTATGTTGGCATCTCGTTTACCGGGACTGTTGCCTCAGTTATCCCGG
AAAGACCTACTTGAAACAGCTGCGATTTATTCTGTTGCAGGTATGGATTCCAGTAGTTTGTTGGCTGGAAGCAGGCCTTT
CCGTGCGCCGCACCATACTGCGTCATCTGTTGCATTGGTAGGGGGAGGCAGTAAGCCCCGTCCGGGAGAGATTTCTCTGG
CGCATCAGGGCGTATTATTTTTGGATGAGCTGCCTGAATTTCCCCGAACAGTACTGGAAGTTCTCCGTGAGCCTCTGGAA
TCAGGTAAGGTTGAGATATCCAGAGTTGCTCAGCAATTGAGTTTTCCTGCGCGTTTTCAGTTGGTAGCAGCAATGAATCC
TTGTCCTTGTGGGTATCTGGGAGACTCTGACGGACGATGCCGTTGTACACCGGATCAAATCAGTCGTTATCAGCATAAAA
TTTCTGGTCCTTTATTAGATCGCATCGACTTGTTTTCCTGGGTGCCAGGTTTGCCTGCGGAGCAACTAATGGCAAGAGGA
GGTGGTGAATCAAGTGATGACGTTCGAGGTAGGGTAATGCTGGCTCATGAGCTACAGATGCAGAGACAGGGGTGCCGTAA
TGCTGAGTTAATCACAGCTGATCTCGAGGTGTATTGTGCTTTGGGGGGTGTGGAGCAGGCATTATTAATTAACGCGATGC
AGCGTCTAAAATTGTCAGCTCGGGCGGCCCATCGGGTCCTGAAAGTCGCGAGGACGGTTGCTGATATGAATCAGTCCGAA
AATATAAATCAGACAGCGTTGTTAGAAGCGTTAGGATTCCGATTTAACGGTGTGCAGGTAGTTGCGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.226

98.608

0.525
  comM Haemophilus influenzae Rd KW20

52.2

99.404

0.519
  comM Vibrio campbellii strain DS40M4

52.016

98.608

0.513
  comM Legionella pneumophila strain ERS1305867

51.406

99.006

0.509
  comM Legionella pneumophila str. Paris

51.406

99.006

0.509
  comM Glaesserella parasuis strain SC1401

50.797

99.801

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

99.801

0.457

Multiple sequence alignment