Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PCI15_RS21850 Genome accession   NZ_AP025281
Coordinates   4815417..4816922 (-) Length   501 a.a.
NCBI ID   WP_271271983.1    Uniprot ID   -
Organism   Aliamphritea hakodatensis strain PT3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4810417..4821922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCI15_RS21835 - 4810805..4811239 (+) 435 WP_271271980.1 cytochrome c5 family protein -
  PCI15_RS21840 rep 4811321..4813336 (-) 2016 WP_271271981.1 DNA helicase Rep -
  PCI15_RS21845 - 4813681..4815420 (+) 1740 WP_271271982.1 EAL domain-containing protein -
  PCI15_RS21850 comM 4815417..4816922 (-) 1506 WP_271271983.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PCI15_RS21855 - 4816977..4817234 (-) 258 WP_271271984.1 accessory factor UbiK family protein -
  PCI15_RS21860 - 4817536..4818795 (+) 1260 WP_271271985.1 ammonium transporter -
  PCI15_RS21865 glnK 4818979..4819317 (+) 339 WP_205660159.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53580.94 Da        Isoelectric Point: 7.6303

>NTDB_id=91006 PCI15_RS21850 WP_271271983.1 4815417..4816922(-) (comM) [Aliamphritea hakodatensis strain PT3]
MALAVLNTRAQLGVSAPPVSVEIHLSGGLPCFAIVGLPEAAVRESRERVRSALLNSGFDFPARRITVNLAPADIPKEGGR
YDLAIALGILLASDQLKVKQHLAFEFMAELGLGGELRPVRGVLPAAMACQRMGNGCWVAQENIAEASLVEALDVYSATDL
LSVCNMLADEQKCLPASAEIISVQPAEAADMADIKGQHQARRALEVAAAGGHNILFAGPPGSGKSMLASRLPGILPELSR
HNLLETAAIYSVAGLDPSKLLAGIRPFRAPHHTASSVALVGGGSRPRPGEISLAHQGVLFLDELPEFPRSVLEVLREPLE
SGRVEVSRVAQQLSFPARFQLVAAMNPCPCGFMGDPDGRCRCTPDQVRRYQHKISGPLMDRIDLFAWVAGLPAEQLLAKQ
HGETSAAIQARVMRAYQRQLKRQGCRNAELSATGLEVHCALDTSEQAILISAVKRLKLSARAAHRILKVARTIADLHQAD
VIGEAALLEALGFRFSDKEVG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=91006 PCI15_RS21850 WP_271271983.1 4815417..4816922(-) (comM) [Aliamphritea hakodatensis strain PT3]
ATGGCGCTCGCAGTACTTAATACCCGGGCACAGCTCGGTGTCAGTGCACCGCCGGTCAGTGTGGAAATACACCTTTCCGG
CGGATTGCCCTGTTTTGCAATTGTGGGTTTGCCTGAGGCGGCAGTGAGAGAAAGCCGGGAAAGGGTACGCAGCGCATTAC
TTAATTCCGGTTTTGATTTCCCTGCCCGGCGTATTACCGTCAATCTCGCACCAGCAGACATACCTAAAGAAGGCGGGCGT
TATGACCTTGCCATTGCATTAGGTATTTTGCTGGCCAGTGATCAGCTGAAAGTAAAACAACATCTGGCTTTTGAATTTAT
GGCAGAGCTGGGGCTGGGAGGGGAGCTGCGCCCGGTTCGGGGTGTGCTGCCTGCTGCAATGGCCTGTCAGCGAATGGGCA
ATGGCTGTTGGGTGGCACAGGAAAATATTGCTGAAGCTTCTCTGGTGGAAGCGCTTGACGTGTATAGCGCTACTGATCTG
CTCAGCGTTTGTAACATGTTGGCTGATGAACAGAAATGTTTACCTGCCAGTGCAGAAATTATCAGTGTGCAGCCTGCTGA
GGCTGCCGATATGGCAGATATAAAAGGCCAGCATCAGGCCCGGCGTGCTTTAGAAGTGGCGGCAGCGGGTGGGCATAATA
TTCTGTTTGCGGGGCCTCCCGGGAGCGGTAAGAGCATGCTTGCATCCCGCTTGCCCGGCATTTTGCCTGAGTTATCCCGG
CACAATCTTTTAGAAACTGCAGCGATATATTCTGTCGCGGGTCTTGACCCCAGTAAGTTGCTGGCCGGTATCAGGCCATT
TCGTGCACCGCATCATACAGCTTCGTCGGTGGCTCTGGTCGGAGGTGGCAGTCGGCCCCGGCCGGGAGAGATTTCTCTGG
CGCATCAGGGGGTGCTGTTTCTGGATGAGCTGCCGGAGTTCCCCCGTTCGGTTCTGGAGGTTTTACGTGAGCCGCTTGAG
TCCGGCAGAGTAGAGGTGTCCAGGGTTGCTCAGCAATTGAGTTTTCCTGCCCGTTTTCAGTTGGTGGCGGCGATGAATCC
CTGCCCCTGTGGTTTCATGGGTGATCCGGATGGCCGGTGTCGCTGTACGCCGGATCAGGTCAGACGATATCAGCATAAAA
TATCCGGTCCGTTAATGGACCGCATTGATTTATTTGCCTGGGTAGCAGGGTTGCCTGCTGAGCAGCTTTTAGCTAAACAG
CACGGTGAAACCAGTGCTGCTATTCAGGCGCGGGTGATGCGGGCGTACCAGCGCCAGCTGAAACGGCAGGGATGCAGGAA
TGCTGAACTGTCTGCAACCGGTCTTGAAGTGCACTGTGCGCTGGATACATCTGAGCAGGCGATATTGATTAGTGCGGTAA
AACGGCTGAAATTATCGGCCCGGGCAGCGCACAGGATTCTGAAGGTTGCCAGAACGATTGCGGATTTACATCAGGCAGAT
GTGATTGGAGAGGCTGCTTTGCTGGAAGCGTTAGGGTTCAGGTTTAGCGACAAGGAAGTAGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.102

99.601

0.509
  comM Haemophilus influenzae Rd KW20

50.699

100

0.507
  comM Vibrio campbellii strain DS40M4

49.901

100

0.501
  comM Glaesserella parasuis strain SC1401

49.307

100

0.497
  comM Legionella pneumophila str. Paris

49.799

99.401

0.495
  comM Legionella pneumophila strain ERS1305867

49.799

99.401

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.6

99.8

0.445

Multiple sequence alignment