Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SOJ49_RS18915 Genome accession   NZ_CP139482
Coordinates   4179450..4180973 (-) Length   507 a.a.
NCBI ID   WP_369856023.1    Uniprot ID   -
Organism   Candidatus Thalassolituus haligoni strain BB40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4174450..4185973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOJ49_RS18900 rep 4175643..4177670 (-) 2028 WP_369856020.1 DNA helicase Rep -
  SOJ49_RS18905 - 4177727..4177957 (-) 231 WP_369856021.1 hypothetical protein -
  SOJ49_RS18910 - 4178039..4179256 (-) 1218 WP_369856022.1 YbfB/YjiJ family MFS transporter -
  SOJ49_RS18915 comM 4179450..4180973 (-) 1524 WP_369856023.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SOJ49_RS18920 - 4181206..4183902 (+) 2697 WP_369856024.1 S8 family peptidase -
  SOJ49_RS18925 - 4184024..4184881 (-) 858 WP_369856025.1 SDR family oxidoreductase -
  SOJ49_RS18930 - 4184989..4185432 (+) 444 WP_369856026.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54233.86 Da        Isoelectric Point: 7.2760

>NTDB_id=909969 SOJ49_RS18915 WP_369856023.1 4179450..4180973(-) (comM) [Candidatus Thalassolituus haligoni strain BB40]
MSFASVFTRAQLGVESPEVRVEVHLSGGLPSLSLVGMPEAAVRESKDRVRSALLTCDYEFPSKRITINLAPADLPKDGGR
FDLAIALGILAASGQIPAVALDHHEFLGELALNGELRPISGALPSAVQCGQAQRTLVLSDGNAGEVALTHTGRALTARSL
TEVVNYLLGKGALTDVLPTPGGSGGLLDVPDLADVRGQPQARRALEIAAAGQHNLLFIGPPGTGKTMLASRLPGILPPMN
EEDALVSASVYSISTSGEGWLERWRRRPFRAPHHTASGVALVGGGSNPRPGEISLAHAGVLFLDELPEYSRKVLDVLREP
LESGRIVISRAQRSVTFPARFQLVAAMNPCPCGYFGDPSGRCRCNEEQVRRYQGQASGPLLDRIDLHVEVPAIPAALLHQ
SAPGESSAAVQQRVLVARQRQLHRQGCCNAELGGNERDRVCQLAEADSVWFLAAVEKLNLSARGYHRVLKLARTIADLDG
AEQIGRPHLLEAVGYRSLDRFIRASET

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=909969 SOJ49_RS18915 WP_369856023.1 4179450..4180973(-) (comM) [Candidatus Thalassolituus haligoni strain BB40]
ATGTCATTTGCATCGGTATTTACCCGCGCCCAGCTGGGCGTAGAGTCTCCCGAAGTTCGGGTTGAAGTGCACCTGTCGGG
TGGGCTGCCATCACTCAGTCTGGTCGGCATGCCGGAAGCGGCGGTACGAGAAAGCAAGGACAGGGTACGCAGTGCCTTGC
TCACCTGCGATTACGAATTTCCTTCCAAACGTATCACGATTAATCTGGCACCCGCCGATTTACCCAAAGACGGCGGGCGG
TTTGATCTGGCGATTGCGCTGGGCATTCTGGCGGCATCCGGGCAGATTCCCGCCGTCGCACTGGACCATCATGAATTTCT
GGGTGAACTGGCACTGAACGGTGAATTGCGGCCGATCAGTGGCGCTTTGCCCAGTGCGGTGCAATGCGGACAGGCACAAA
GAACGTTGGTACTCAGTGACGGCAATGCCGGTGAAGTGGCTCTGACTCATACCGGCCGGGCGCTGACGGCTCGCTCGTTA
ACGGAGGTGGTTAATTATCTGCTTGGCAAGGGAGCCCTGACGGACGTCTTGCCGACGCCAGGAGGTAGCGGAGGGCTGCT
GGATGTTCCGGATTTGGCCGATGTCCGGGGCCAGCCACAAGCACGCCGGGCGTTGGAAATCGCCGCAGCGGGGCAACATA
ACCTGCTGTTTATCGGCCCGCCGGGCACAGGAAAAACCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCGCCAATGAAC
GAGGAAGATGCGCTGGTATCGGCCTCGGTGTATTCGATCTCCACGTCGGGCGAGGGCTGGCTCGAACGCTGGCGGCGGCG
GCCATTTCGAGCGCCGCATCATACCGCCTCAGGGGTGGCGCTGGTGGGCGGTGGCAGTAACCCCCGGCCGGGAGAGATTT
CACTGGCACATGCCGGAGTATTGTTTCTGGACGAATTGCCAGAATACAGCCGCAAGGTGCTGGATGTACTGCGAGAGCCG
CTGGAAAGTGGCCGAATTGTGATCAGTCGTGCGCAGCGCAGCGTCACCTTTCCGGCCCGGTTTCAGCTGGTGGCGGCAAT
GAACCCCTGTCCGTGTGGCTATTTTGGTGATCCGTCTGGCCGGTGTCGTTGCAACGAAGAACAAGTACGGCGTTATCAGG
GCCAGGCATCCGGCCCCTTGCTCGACCGTATTGATCTGCATGTCGAGGTGCCCGCGATTCCGGCGGCGCTGCTGCATCAG
TCAGCCCCTGGCGAAAGCAGTGCGGCGGTTCAGCAACGGGTTCTGGTCGCACGCCAACGGCAGTTGCACCGACAGGGTTG
CTGCAATGCCGAACTGGGCGGCAACGAACGTGATCGGGTCTGCCAGTTGGCCGAGGCCGACAGTGTCTGGTTTCTGGCGG
CGGTGGAAAAACTCAACCTCAGTGCGCGGGGCTATCACCGGGTACTCAAGTTGGCGCGCACGATTGCCGACCTTGATGGG
GCTGAGCAGATTGGTCGTCCGCATTTGCTGGAAGCGGTTGGTTATCGCAGTCTGGATCGGTTTATCCGAGCCTCCGAGAC
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.96

99.408

0.546
  comM Vibrio campbellii strain DS40M4

53.968

99.408

0.536
  comM Glaesserella parasuis strain SC1401

52.465

100

0.525
  comM Haemophilus influenzae Rd KW20

51.874

100

0.519
  comM Legionella pneumophila str. Paris

47.791

98.225

0.469
  comM Legionella pneumophila strain ERS1305867

47.791

98.225

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.168

100

0.452