Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RI049_RS22695 Genome accession   NZ_CP139439
Coordinates   4736315..4736845 (-) Length   176 a.a.
NCBI ID   WP_008455813.1    Uniprot ID   -
Organism   Cedecea neteri strain A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4731315..4741845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI049_RS22675 (RI049_22675) - 4732323..4733258 (-) 936 WP_321218725.1 aromatic alcohol reductase -
  RI049_RS22680 (RI049_22680) - 4733402..4734313 (+) 912 WP_321218726.1 LysR family transcriptional regulator -
  RI049_RS22685 (RI049_22685) - 4734498..4735631 (+) 1134 WP_321218727.1 MFS transporter -
  RI049_RS22690 (RI049_22690) - 4735578..4736195 (-) 618 WP_321218728.1 hypothetical protein -
  RI049_RS22695 (RI049_22695) ssb 4736315..4736845 (-) 531 WP_008455813.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RI049_RS22700 (RI049_22700) uvrA 4737067..4739892 (+) 2826 WP_045780988.1 excinuclease ABC subunit UvrA -
  RI049_RS22705 (RI049_22705) - 4739893..4740246 (-) 354 WP_045784475.1 MmcQ/YjbR family DNA-binding protein -
  RI049_RS22710 (RI049_22710) aphA 4740385..4741098 (-) 714 WP_045780987.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18745.74 Da        Isoelectric Point: 5.2456

>NTDB_id=909737 RI049_RS22695 WP_008455813.1 4736315..4736845(-) (ssb) [Cedecea neteri strain A1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=909737 RI049_RS22695 WP_008455813.1 4736315..4736845(-) (ssb) [Cedecea neteri strain A1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
GGGCGCCGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGGGGTGCACCAGCGGGCGGCAACGGCGGCCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGAGCGCGCCA
GCGCCATCTAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.767
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.602
  ssb Neisseria meningitidis MC58

47.753

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.392