Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SIO17_RS13370 Genome accession   NZ_CP139436
Coordinates   2861294..2862814 (-) Length   506 a.a.
NCBI ID   WP_010376607.1    Uniprot ID   -
Organism   Pseudoalteromonas piscicida strain WJX-06     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2856294..2867814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIO17_RS13355 (SIO17_13355) - 2856582..2857709 (-) 1128 WP_010376613.1 hemolysin family protein -
  SIO17_RS13360 (SIO17_13360) - 2857876..2860329 (+) 2454 WP_010376611.1 S9 family peptidase -
  SIO17_RS13365 (SIO17_13365) - 2860555..2861250 (+) 696 WP_010376609.1 response regulator transcription factor -
  SIO17_RS13370 (SIO17_13370) comM 2861294..2862814 (-) 1521 WP_010376607.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SIO17_RS13375 (SIO17_13375) - 2862832..2863446 (-) 615 WP_010376603.1 trimeric intracellular cation channel family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54830.84 Da        Isoelectric Point: 8.0320

>NTDB_id=909704 SIO17_RS13370 WP_010376607.1 2861294..2862814(-) (comM) [Pseudoalteromonas piscicida strain WJX-06]
MSLARVFTRAQVGITAPEVIVEVHLSNGLPAFSIVGLPETSVKEAKERVRSALVNAGFLFPEQRITVNLAPADLPKDGGR
FDFAIALGVLVASGQLDSQAIADKEFYGELALNGELRTVTAILPSVIAAAKEGRTAYLPIGNDAVASLAADANRVAISCL
RTAWLDLSGQQSLRFNRLYPDDLNLQASGGSLLDMAEVKGQEGAKRVLEIAAAGGHNVLFLGPPGTGKSMLAQRLPTIMP
LMTDNQALETASIYSILGKTISQSNWKTRPFRAPHHTCSAVALVGGSSNPKPGEISLSNNGVLFLDELPEFDRKVLDSLR
EPMETGMVTISRAARQVDYPANFQLIAALNPSPTGCYTDKRASPDQVLRYLAKISGPFLDRIDLQVELPRLKTEELQSQS
DGESSETIRARVEQAYKTALARQGKCNDQLSVKELNNICYLADTERLFLAKAAEKLKLSPRSYHRIIKVARTIADLSSTP
NIGLSHLKEALSYRALERLLAQLTQF

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909704 SIO17_RS13370 WP_010376607.1 2861294..2862814(-) (comM) [Pseudoalteromonas piscicida strain WJX-06]
ATGTCTTTAGCAAGAGTCTTCACTCGAGCACAAGTTGGTATTACCGCTCCCGAGGTAATTGTTGAGGTGCACCTTAGCAA
CGGTTTACCTGCCTTTAGTATCGTTGGATTACCCGAAACCTCAGTTAAAGAAGCCAAAGAGCGCGTCCGTAGTGCCCTTG
TTAATGCTGGCTTTTTATTTCCAGAACAGCGTATCACAGTAAACTTAGCACCAGCAGATCTACCCAAAGACGGTGGCCGC
TTTGACTTTGCAATCGCACTCGGTGTTCTCGTCGCATCAGGACAGTTAGATAGTCAAGCTATTGCTGATAAAGAGTTTTA
TGGTGAGCTTGCGTTAAATGGTGAGCTGAGGACGGTCACTGCCATTTTGCCATCTGTTATTGCAGCAGCGAAGGAGGGGC
GAACTGCTTACCTACCAATTGGTAACGATGCAGTTGCGAGCCTTGCCGCTGATGCCAATCGTGTTGCTATAAGCTGCTTG
CGTACAGCATGGTTAGACTTAAGCGGCCAGCAATCACTTAGGTTTAATCGACTCTACCCAGACGATTTAAATTTACAAGC
CTCAGGGGGGAGCTTGCTGGATATGGCTGAGGTGAAAGGGCAAGAGGGGGCGAAGCGAGTGCTAGAAATAGCCGCGGCAG
GTGGGCATAACGTTTTATTTCTTGGTCCTCCTGGCACTGGAAAATCAATGCTTGCTCAGCGTCTACCCACTATAATGCCA
CTAATGACGGATAATCAGGCATTAGAAACAGCTTCTATCTATTCCATACTGGGAAAAACAATCAGTCAATCAAACTGGAA
AACAAGGCCTTTTAGAGCTCCACATCATACTTGCTCTGCGGTAGCCTTGGTTGGAGGCTCGTCGAACCCTAAGCCTGGGG
AGATATCATTGTCAAATAATGGCGTTCTATTTTTGGACGAGTTGCCAGAATTTGATAGGAAGGTACTGGACTCATTACGT
GAGCCGATGGAAACGGGCATGGTAACGATTTCGCGTGCAGCTCGACAAGTTGATTACCCTGCAAACTTTCAACTGATTGC
AGCATTAAATCCCAGTCCTACAGGTTGTTACACTGACAAGCGAGCGTCTCCGGATCAAGTATTGCGCTATTTGGCTAAGA
TTTCAGGTCCATTTTTAGACCGAATAGATCTACAGGTAGAATTACCTCGTCTAAAAACAGAAGAGCTACAATCCCAGAGT
GATGGAGAGTCTAGCGAGACAATAAGGGCTAGGGTGGAACAGGCCTATAAAACAGCTTTAGCACGTCAGGGAAAATGTAA
CGATCAACTGAGTGTAAAAGAGCTAAATAATATCTGCTATCTTGCTGATACTGAGCGTTTATTTCTAGCAAAGGCAGCAG
AAAAACTAAAGCTATCACCACGTTCATATCATCGAATAATCAAGGTCGCGCGTACCATAGCAGATCTGAGCTCGACACCT
AATATTGGCTTATCACATTTAAAGGAAGCGCTTAGTTATCGTGCGCTGGAGAGGTTGTTAGCTCAGTTAACACAGTTCTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.649

100

0.538
  comM Haemophilus influenzae Rd KW20

53.452

100

0.536
  comM Glaesserella parasuis strain SC1401

52.652

100

0.53
  comM Vibrio cholerae strain A1552

52.465

100

0.526
  comM Legionella pneumophila str. Paris

50

99.209

0.496
  comM Legionella pneumophila strain ERS1305867

50

99.209

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.665

100

0.443