Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPM54_RS25255 Genome accession   NZ_CP139425
Coordinates   5268112..5269635 (+) Length   507 a.a.
NCBI ID   WP_047570072.1    Uniprot ID   -
Organism   Serratia marcescens strain S50079     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 5269954..5270331 5268112..5269635 flank 319


Gene organization within MGE regions


Location: 5268112..5270331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM54_RS25255 (SPM54_25250) comM 5268112..5269635 (+) 1524 WP_047570072.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SPM54_RS25260 (SPM54_25255) - 5269662..5269937 (-) 276 Protein_4932 DUF413 domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54418.68 Da        Isoelectric Point: 7.9146

>NTDB_id=909659 SPM54_RS25255 WP_047570072.1 5268112..5269635(+) (comM) [Serratia marcescens strain S50079]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDSADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVLQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=909659 SPM54_RS25255 WP_047570072.1 5268112..5269635(+) (comM) [Serratia marcescens strain S50079]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAATAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCTCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGATGCCGGGC
GACAACTGATCCTCTCAACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGTGCCTTTCTGCTCGGCCAGGGCGAACTGCCGGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAGCGCCGATCTGCGCGATATCATCGGCCAGGAGCAAGCCAAGCGGGCACTGGAGATCGCCGCCGCTGGCGGGCATAACC
TATTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGCCGCCTCACGGGCCTACTGCCACCGCTCACGGAG
CCTGAGGCGCTGGAAAGTCTGGCGGTCGCCAGCTTGCAGCATCACATTCCCGCTGCCTTACCATGGCGCCAGAGGCCGTT
TCGCGCACCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGCTGATCGCGGCAATGAACCC
CAGCCCGACGGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTGCCGCCGGGAACACTCAGTCATCGGAAAACACAC
GGAGAAAGCAGCGAACAAGTGCGGAAAAGAGTGCTGCAGGCACGCGCCCGGCAACTCGAACGCGCCGGTAAAGTCAACGC
GCTGCTGAGCAACCGCGAAGTGGAACGGGATTGCGTTCTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACGTTAAACA
CGCTGGGGTTATCGGTTCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGCCACCTCAGCGAAGCGCTGGGCTATCGCAGCATGGACCGCCTGCTGTTACAACTGCATCGTAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

65.878

100

0.659
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.343

99.014

0.637
  comM Legionella pneumophila str. Paris

50.803

98.225

0.499
  comM Legionella pneumophila strain ERS1305867

50.803

98.225

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.454