Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPM54_RS23605 Genome accession   NZ_CP139425
Coordinates   4913741..4914271 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain S50079     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4908741..4919271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM54_RS23575 (SPM54_23570) - 4909064..4910425 (-) 1362 WP_033636185.1 NCS2 family permease -
  SPM54_RS23580 (SPM54_23575) - 4910758..4911165 (-) 408 WP_033649719.1 VOC family protein -
  SPM54_RS23585 (SPM54_23580) - 4911213..4911881 (-) 669 WP_033649718.1 glutathione S-transferase -
  SPM54_RS23590 (SPM54_23585) - 4911878..4912321 (-) 444 WP_094860211.1 lipocalin-like domain-containing protein -
  SPM54_RS23595 (SPM54_23590) - 4912518..4912778 (+) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  SPM54_RS23600 (SPM54_23595) - 4912928..4913677 (+) 750 WP_033649717.1 3-oxoacyl-ACP reductase family protein -
  SPM54_RS23605 (SPM54_23600) ssb 4913741..4914271 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SPM54_RS23610 (SPM54_23605) uvrA 4914549..4917377 (+) 2829 WP_033636192.1 excinuclease ABC subunit UvrA -
  SPM54_RS23615 (SPM54_23610) - 4917606..4918658 (+) 1053 WP_047570363.1 NAD(P)-dependent alcohol dehydrogenase -
  SPM54_RS23620 (SPM54_23615) maa 4918689..4919246 (-) 558 WP_041036886.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=909657 SPM54_RS23605 WP_004936793.1 4913741..4914271(-) (ssb) [Serratia marcescens strain S50079]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=909657 SPM54_RS23605 WP_004936793.1 4913741..4914271(-) (ssb) [Serratia marcescens strain S50079]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364