Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SM123_RS07235 Genome accession   NZ_CP139419
Coordinates   1511277..1512227 (-) Length   316 a.a.
NCBI ID   WP_118228361.1    Uniprot ID   A0AAE8B4K5
Organism   Streptococcus lingualis strain S5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506277..1517227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS07215 (SM123_07215) - 1506925..1507410 (-) 486 WP_023917679.1 LURP-one-related/scramblase family protein -
  SM123_RS07220 (SM123_07220) prsA 1507664..1508608 (-) 945 WP_320909335.1 peptidylprolyl isomerase PrsA -
  SM123_RS07225 (SM123_07225) - 1508681..1509400 (-) 720 WP_070586540.1 O-methyltransferase -
  SM123_RS07230 (SM123_07230) pepF 1509402..1511204 (-) 1803 WP_070505789.1 oligoendopeptidase F Regulator
  SM123_RS07235 (SM123_07235) coiA 1511277..1512227 (-) 951 WP_118228361.1 competence protein CoiA family protein Machinery gene
  SM123_RS07240 (SM123_07240) - 1512301..1512882 (-) 582 WP_118228362.1 hypothetical protein -
  SM123_RS07245 (SM123_07245) - 1513050..1514222 (-) 1173 WP_118228363.1 MFS transporter -
  SM123_RS07250 (SM123_07250) - 1514293..1515639 (-) 1347 WP_049490513.1 DUF1958 domain-containing protein -
  SM123_RS07255 (SM123_07255) - 1515828..1516535 (-) 708 WP_003006372.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37768.41 Da        Isoelectric Point: 6.9901

>NTDB_id=909540 SM123_RS07235 WP_118228361.1 1511277..1512227(-) (coiA) [Streptococcus lingualis strain S5]
MFIAMDNNQKRWNCMEEIPAVTEGPFYCLACHSPVRLKNGSVLRAHFAHIKLQHCPYHHEAESFEHLELKACLYDWASKE
SHTEVESYLADFQQIADLLVVDKNLALEVQCSSLSLERLKERSDAYRSNGYQVNWLLGKKLWLKERLTKLQAGFLYFSQN
RGFHLWELDLTKKELRLQYLIHEDLRGRLHYQTEIFPFGQRSLLEVLRTPYLSQPMEQMAVELDRTFLTYIQQQLFYRHP
KWLKLQEELYLQGHHLMELGLDFFYPLCRPILSQNLLQIKEDVEGYYQQFMTYYQSQGIQPVQILYPPRFYAQQKS

Nucleotide


Download         Length: 951 bp        

>NTDB_id=909540 SM123_RS07235 WP_118228361.1 1511277..1512227(-) (coiA) [Streptococcus lingualis strain S5]
ATGTTTATTGCCATGGATAACAATCAAAAGCGGTGGAACTGTATGGAAGAGATCCCAGCTGTGACAGAAGGTCCCTTCTA
TTGCTTGGCTTGTCATAGTCCAGTGCGTCTAAAAAATGGCTCGGTTCTACGGGCTCATTTTGCTCATATAAAATTACAGC
ATTGTCCCTATCATCACGAAGCTGAGAGTTTTGAACATCTGGAATTGAAAGCTTGTCTTTATGACTGGGCCTCTAAGGAA
TCTCATACAGAGGTAGAAAGTTATTTAGCAGACTTTCAACAAATTGCCGATCTTTTGGTAGTAGACAAGAACTTAGCTTT
GGAAGTGCAGTGCAGCTCCCTATCTTTAGAACGCTTGAAGGAGAGGAGCGATGCTTATCGATCCAACGGTTACCAGGTCA
ATTGGTTACTTGGTAAAAAGTTGTGGCTCAAGGAAAGGTTAACAAAACTGCAGGCAGGCTTTCTTTATTTTAGTCAGAAT
CGCGGGTTCCATCTTTGGGAATTGGATCTGACAAAGAAAGAGCTACGTTTACAATACCTCATTCATGAGGATTTACGAGG
GCGATTGCATTATCAGACAGAAATTTTCCCTTTTGGTCAAAGGTCTTTACTAGAAGTCTTACGTACCCCTTATCTTTCGC
AACCCATGGAACAAATGGCAGTCGAGCTCGATCGGACATTTTTAACATATATACAGCAGCAACTCTTTTATCGTCATCCA
AAGTGGCTGAAGCTTCAGGAAGAACTCTATTTGCAGGGACACCATCTGATGGAACTGGGGCTAGATTTCTTTTATCCTCT
TTGTCGTCCGATCCTTTCACAGAACTTGCTCCAAATTAAAGAGGATGTAGAAGGTTACTACCAGCAATTTATGACCTATT
ATCAGTCGCAAGGGATCCAACCCGTTCAGATCCTTTATCCCCCACGTTTTTATGCTCAACAGAAAAGCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(23-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.118

99.051

0.506
  coiA Streptococcus pneumoniae Rx1

49.521

99.051

0.491
  coiA Streptococcus pneumoniae D39

49.521

99.051

0.491
  coiA Streptococcus pneumoniae R6

49.521

99.051

0.491
  coiA Streptococcus pneumoniae TIGR4

49.521

99.051

0.491
  coiA Lactococcus lactis subsp. cremoris KW2

42.547

100

0.434