Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SM123_RS07230 Genome accession   NZ_CP139419
Coordinates   1509402..1511204 (-) Length   600 a.a.
NCBI ID   WP_070505789.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504402..1516204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS07215 (SM123_07215) - 1506925..1507410 (-) 486 WP_023917679.1 LURP-one-related/scramblase family protein -
  SM123_RS07220 (SM123_07220) prsA 1507664..1508608 (-) 945 WP_320909335.1 peptidylprolyl isomerase PrsA -
  SM123_RS07225 (SM123_07225) - 1508681..1509400 (-) 720 WP_070586540.1 O-methyltransferase -
  SM123_RS07230 (SM123_07230) pepF 1509402..1511204 (-) 1803 WP_070505789.1 oligoendopeptidase F Regulator
  SM123_RS07235 (SM123_07235) coiA 1511277..1512227 (-) 951 WP_118228361.1 competence protein CoiA family protein Machinery gene
  SM123_RS07240 (SM123_07240) - 1512301..1512882 (-) 582 WP_118228362.1 hypothetical protein -
  SM123_RS07245 (SM123_07245) - 1513050..1514222 (-) 1173 WP_118228363.1 MFS transporter -
  SM123_RS07250 (SM123_07250) - 1514293..1515639 (-) 1347 WP_049490513.1 DUF1958 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69137.97 Da        Isoelectric Point: 4.5998

>NTDB_id=909539 SM123_RS07230 WP_070505789.1 1509402..1511204(-) (pepF) [Streptococcus lingualis strain S5]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEAASLAADIKAASHYAGHLLDSAQTLLDTTNAYLELSRRLEKVYVYAHMKND
QDTRVAKYQEYQSKGMSLYSLLGETFAFYEPEFMAITDEQYKAFVSEVPALEQYGHYFDRLLEKKEHVLSQKEEELLAGA
GEIFAAGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYEQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYDSLVAAVNKHLPLLQRYVQLRSKILGISDLKMYDMYTPLSDTDYKFTYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYAELNEKYYGLSKDDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRDKYIDYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=909539 SM123_RS07230 WP_070505789.1 1509402..1511204(-) (pepF) [Streptococcus lingualis strain S5]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACAATTTTTGCGACAGATCAAGCTTGGGA
AGAAGAAGCAGCTAGCTTAGCTGCAGATATTAAAGCAGCAAGCCACTATGCTGGTCATTTATTGGATTCAGCGCAAACAC
TTTTGGATACAACCAATGCATATTTGGAATTGAGCCGTCGTTTGGAAAAGGTCTACGTCTATGCTCATATGAAAAATGAC
CAAGATACACGTGTGGCTAAATACCAAGAGTACCAATCAAAAGGGATGTCTCTTTATAGCTTGTTGGGTGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAGTACAAAGCTTTTGTGAGTGAGGTTCCGGCCTTGGAACAAT
ATGGTCATTATTTTGATCGTTTGCTAGAGAAAAAAGAACATGTCTTGTCTCAAAAAGAAGAGGAATTACTTGCAGGAGCT
GGTGAGATCTTTGCGGCTGGTGGGGAAACCTTTGAAATCTTGGACAATGCAGATATTGTTTTCCCAACTGTGCATGATGA
CAAGGGCGAAGAAGTTCAATTAACCCATGGAAACTATATTTCTTTGGTAGAATCAAAAGATCGTGCCGTTCGTAAAGAAG
CTTACGAAGGCCTCTACAAGGTTTATGAACAGTACCAACATACCTATGCTAAAACCTTGCAAACCAATGTGAAAGTTCAC
AACTTTAATGCCAAAGTTCGCAAATTCTCATCTGCCCGTGAAGCGGCCCTTTCTGAAAACTTTGTACCAGAAAGTGTTTA
TGATAGCTTGGTAGCAGCTGTGAACAAACATTTGCCACTCTTGCAACGTTATGTGCAATTGCGTTCAAAAATTCTTGGAA
TCTCAGACTTGAAGATGTACGATATGTATACGCCATTATCCGATACAGACTACAAGTTTACCTATGAAGAATCGTTGGCC
AAAGCAGAAGAAGTCTTGGCCGTTTTGGGTGAGGACTACCTTTCTCGTGTGAAACGTGCCTTTAGCGAACGGTGGATTGA
TGTGCATGTCAACCAAGGAAAACGATCAGGTGCTTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAGCCTTATGTCTATGGGGACTATTCCATCTTCCTTGCCGAAATCGCCTCTACAACCAATGAAAATATACTGACCGAACG
TCTGTTAGAAGAAGTAGAAGACGATGCAACTCGTTTTGCTATTTTGAATCACTTCTTGGATGGCTTCCGTGGAACCGTCT
TCCGTCAAACTCAGTTTGCCGAATTTGAGCATGCCATTCACAAAGCAGACCAAGAAGGTACGGTATTGACTAGTGAGTTC
TTGAACAACCTTTATGCAGAGCTCAATGAAAAATACTATGGTCTTTCAAAAGATGACAACCCTGAAATCCAGTATGAATG
GGCTCGGATTCCTCACTTCTACTATAACTACTATGTTTTCCAATATTCAACAGGGTTTGCAGCAGCTTCAGCCTTAGCTG
AAAAAATTGTTCATGGAACACAAGAAGATCGTGATAAATATATCGACTACTTGAAGGCCGGAAACTCTGATTATCCACTC
AACGTCATCCGTAAAGCAGGTGTGGATATGGAAAAAGAAGACTATTTGGACGCAGCCTTTGCGGTCTTCGAACGTCGGTT
GAATGAATTTGAAGCCCTAGTAGAAAAATTAGGACTCGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.463

99.333

0.69