Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SM121_RS08335 Genome accession   NZ_CP139418
Coordinates   1706544..1707494 (-) Length   316 a.a.
NCBI ID   WP_155168935.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701544..1712494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS08315 (SM121_08315) - 1702194..1702679 (-) 486 WP_320910838.1 LURP-one-related family protein -
  SM121_RS08320 (SM121_08320) prsA 1702933..1703877 (-) 945 WP_155125647.1 peptidylprolyl isomerase PrsA -
  SM121_RS08325 (SM121_08325) - 1703945..1704667 (-) 723 WP_155125645.1 O-methyltransferase -
  SM121_RS08330 (SM121_08330) pepF 1704669..1706471 (-) 1803 WP_320910839.1 oligoendopeptidase F Regulator
  SM121_RS08335 (SM121_08335) coiA 1706544..1707494 (-) 951 WP_155168935.1 competence protein CoiA family protein Machinery gene
  SM121_RS08340 (SM121_08340) - 1707568..1708149 (-) 582 WP_155168933.1 hypothetical protein -
  SM121_RS08345 (SM121_08345) - 1708317..1709489 (-) 1173 WP_195487053.1 MFS transporter -
  SM121_RS08350 (SM121_08350) - 1709560..1710906 (-) 1347 WP_320910840.1 DUF1958 domain-containing protein -
  SM121_RS08355 (SM121_08355) - 1711095..1711802 (-) 708 WP_151378885.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37905.58 Da        Isoelectric Point: 6.6822

>NTDB_id=909500 SM121_RS08335 WP_155168935.1 1706544..1707494(-) (coiA) [Streptococcus dentalis strain S1]
MFIAMDKNKERWNCMEEIPPVTEGPFYCLVCHSPVRLKNGSVLRAHFAHIKLQHCPYHHEAESFEHLELKACLYDWASKE
SNTEVESYLADFQQIADLLVVDKNLALEVQCSSLSLERLKERSDAYRSNGYQVYWLLGKKLWLKERLTKLQAGFLYFSQN
RGFHLWELDLTKKELRLQYLIHEDLRGRLHYQTEVFPFGQRSLLEVLRTPYLSQPMQQMAVELDRTFLTYIQQQLFYRHP
KWLKLQEELYLQGHHLMELGLDFFYPLCRPILSQNLLQIEEDVEDYYQQFMVYYQSQGIQPVQILYPPRFYAQQKS

Nucleotide


Download         Length: 951 bp        

>NTDB_id=909500 SM121_RS08335 WP_155168935.1 1706544..1707494(-) (coiA) [Streptococcus dentalis strain S1]
ATGTTTATTGCCATGGATAAAAATAAAGAGCGCTGGAATTGTATGGAGGAGATTCCGCCTGTGACAGAAGGTCCCTTCTA
TTGCTTGGTTTGTCATAGTCCAGTGCGTCTAAAAAATGGCTCGGTTCTACGGGCTCATTTTGCTCATATAAAATTACAGC
ATTGTCCCTATCATCACGAAGCTGAGAGTTTTGAACATCTGGAATTGAAAGCTTGTCTTTATGATTGGGCCTCTAAGGAA
TCTAATACAGAGGTAGAAAGTTATTTAGCAGACTTTCAACAAATTGCCGATCTTTTGGTAGTAGACAAGAACTTAGCTTT
GGAAGTGCAGTGCAGCTCCCTATCTTTAGAACGCTTGAAGGAGAGGAGCGATGCTTATCGATCCAACGGTTACCAGGTCT
ATTGGTTACTTGGTAAAAAGTTGTGGCTCAAGGAAAGACTAACAAAGCTACAGGCTGGCTTTCTTTATTTTAGTCAGAAT
CGAGGGTTCCATCTTTGGGAATTGGATCTGACAAAGAAAGAGCTACGTCTGCAATACCTCATTCATGAGGATTTACGAGG
GCGATTGCATTATCAAACAGAAGTTTTCCCTTTTGGTCAAAGGTCTTTACTGGAAGTCTTACGGACCCCTTATCTTTCGC
AACCCATGCAGCAAATGGCAGTCGAGCTCGATCGTACATTTTTAACGTATATACAGCAGCAACTCTTTTATCGTCATCCA
AAGTGGCTGAAGCTTCAGGAAGAACTCTATTTGCAGGGACACCATCTGATGGAACTGGGGCTGGATTTCTTTTATCCTCT
TTGTCGTCCGATCCTTTCACAGAACTTGCTCCAAATTGAAGAGGATGTAGAAGATTACTACCAGCAATTTATGGTCTATT
ATCAGTCGCAAGGGATCCAACCCGTTCAGATCCTTTATCCCCCACGTTTTTATGCTCAACAGAAAAGCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(24-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.118

99.051

0.506
  coiA Streptococcus pneumoniae Rx1

49.521

99.051

0.491
  coiA Streptococcus pneumoniae D39

49.521

99.051

0.491
  coiA Streptococcus pneumoniae R6

49.521

99.051

0.491
  coiA Streptococcus pneumoniae TIGR4

49.521

99.051

0.491
  coiA Lactococcus lactis subsp. cremoris KW2

42.236

100

0.43