Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SM121_RS08330 Genome accession   NZ_CP139418
Coordinates   1704669..1706471 (-) Length   600 a.a.
NCBI ID   WP_320910839.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699669..1711471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS08315 (SM121_08315) - 1702194..1702679 (-) 486 WP_320910838.1 LURP-one-related family protein -
  SM121_RS08320 (SM121_08320) prsA 1702933..1703877 (-) 945 WP_155125647.1 peptidylprolyl isomerase PrsA -
  SM121_RS08325 (SM121_08325) - 1703945..1704667 (-) 723 WP_155125645.1 O-methyltransferase -
  SM121_RS08330 (SM121_08330) pepF 1704669..1706471 (-) 1803 WP_320910839.1 oligoendopeptidase F Regulator
  SM121_RS08335 (SM121_08335) coiA 1706544..1707494 (-) 951 WP_155168935.1 competence protein CoiA family protein Machinery gene
  SM121_RS08340 (SM121_08340) - 1707568..1708149 (-) 582 WP_155168933.1 hypothetical protein -
  SM121_RS08345 (SM121_08345) - 1708317..1709489 (-) 1173 WP_195487053.1 MFS transporter -
  SM121_RS08350 (SM121_08350) - 1709560..1710906 (-) 1347 WP_320910840.1 DUF1958 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69223.04 Da        Isoelectric Point: 4.5807

>NTDB_id=909499 SM121_RS08330 WP_320910839.1 1704669..1706471(-) (pepF) [Streptococcus dentalis strain S1]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEAASLAADIKAANHYAGHLLDSAQTLLDTTNAYLELSRRIEKVYVYAHMKND
QDTRVAKYQEYQSKGMSLYSLLGETFAFYEPEFMAITDEQYKAFVSEVPDLEQYGHYFDRLLEKKEHVLSQKEEELLAGA
GEIFAAGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYEQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYDSLVAAVNKHLPLLQRYVQLRSKILGISDLKMYDMYTPLSDTDYKFTYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYAELNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRDKYIDYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=909499 SM121_RS08330 WP_320910839.1 1704669..1706471(-) (pepF) [Streptococcus dentalis strain S1]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACAATTTTTGCGACAGATCAAGCTTGGGA
AGAAGAAGCAGCCAGCTTAGCTGCAGATATTAAAGCAGCAAACCACTATGCTGGCCATTTGTTGGATTCAGCGCAAACAC
TTTTGGATACAACCAATGCATATTTGGAATTGAGCCGTCGCATAGAAAAGGTCTACGTCTATGCCCATATGAAAAATGAC
CAAGATACACGAGTGGCTAAATACCAAGAGTACCAATCAAAAGGGATGTCTCTTTATAGCTTGTTAGGCGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAGTACAAAGCCTTTGTGAGTGAGGTTCCAGACTTGGAGCAAT
ATGGTCATTATTTTGATCGTTTGCTTGAGAAGAAAGAACATGTCTTGTCTCAAAAAGAAGAGGAATTACTTGCAGGAGCT
GGTGAGATCTTTGCGGCTGGTGGAGAAACTTTTGAAATCTTGGACAATGCAGATATTGTTTTCCCAACTGTACATGATGA
CAAGGGCGAAGAAGTTCAATTAACCCATGGGAACTATATTTCTTTGGTAGAATCTAAAGATCGTGCCGTTCGTAAAGAAG
CTTACGAAGGTCTCTACAAGGTCTATGAACAGTACCAACATACCTATGCTAAAACCTTGCAAACCAATGTGAAAGTTCAT
AACTTTAATGCCAAAGTTCGCAAATTCTCATCTGCTCGTGAAGCGGCCCTTTCTGAAAACTTTGTACCAGAAAGTGTTTA
TGATAGCTTGGTAGCAGCGGTGAACAAACATTTGCCACTCTTGCAACGCTATGTGCAATTGCGCTCAAAAATTCTTGGAA
TCTCAGACTTGAAGATGTACGATATGTATACGCCATTATCCGATACAGACTACAAGTTTACTTATGAAGAATCATTGGCC
AAAGCAGAAGAAGTCTTGGCTGTTTTGGGTGAGGACTACCTTTCTCGTGTAAAACGTGCCTTTAGCGAACGGTGGATTGA
TGTGCATGTCAACCAAGGAAAACGCTCAGGTGCTTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAGCCTTATGTCTATGGGGACTATTCCATCTTCCTTGCCGAAATCGCCTCTACAACCAATGAAAATATCCTGACCGAACG
TCTGTTAGAAGAAGTAGAAGACGATGCAACTCGCTTTGCTATTTTGAATCACTTCTTGGATGGCTTCCGTGGAACCGTCT
TCCGTCAAACCCAGTTTGCCGAATTTGAGCATGCCATTCATAAAGCAGACCAAGAAGGTACCGTTTTGACTAGTGAGTTC
TTGAACAACCTTTATGCAGAGCTCAATGAAAAATACTATGGTCTTTCAAAAGAAGACAACCCTGAGATCCAATATGAATG
GGCTCGGATTCCTCACTTCTACTATAACTACTACGTCTTCCAATATTCAACAGGTTTTGCAGCAGCTTCTGCCTTAGCTG
AAAAAATAGTTCACGGAACCCAGGAAGATCGCGACAAATATATCGACTACTTGAAAGCTGGAAACTCTGATTATCCGCTC
AACGTTATCCGCAAAGCAGGTGTGGATATGGAAAAAGAAGACTACTTGGACGCAGCCTTTGCGGTCTTCGAACGTCGTTT
GAATGAATTTGAAGCCCTAGTAGAAAAATTAGGACTCGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.295

99.333

0.688