Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM121_RS00045 Genome accession   NZ_CP139418
Coordinates   9653..11638 (-) Length   661 a.a.
NCBI ID   WP_155127073.1    Uniprot ID   A0A6A8V7E1
Organism   Streptococcus dentalis strain S1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4653..16638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS00025 (SM121_00025) amiF 5138..6064 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM121_RS00030 (SM121_00030) amiE 6075..7142 (-) 1068 WP_003004369.1 ABC transporter ATP-binding protein Regulator
  SM121_RS00035 (SM121_00035) amiD 7154..8080 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SM121_RS00040 (SM121_00040) amiC 8080..9579 (-) 1500 WP_003013994.1 ABC transporter permease Regulator
  SM121_RS00045 (SM121_00045) amiA3 9653..11638 (-) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator
  SM121_RS00050 (SM121_00050) - 11844..13085 (+) 1242 WP_320910915.1 serine hydrolase -
  SM121_RS00055 (SM121_00055) sufB 13144..14556 (-) 1413 WP_320910916.1 Fe-S cluster assembly protein SufB -
  SM121_RS00060 (SM121_00060) sufU 14589..15023 (-) 435 WP_003004754.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SM121_RS00065 (SM121_00065) - 15010..16236 (-) 1227 WP_320910917.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72646.11 Da        Isoelectric Point: 5.2757

>NTDB_id=909459 SM121_RS00045 WP_155127073.1 9653..11638(-) (amiA3) [Streptococcus dentalis strain S1]
MKKGKVFAVAGVTLLAAGLLAACSSSNTSKASSGEDKNYGYVYTSDPTTLDYTISSKAATHDITTNVVDGLLENDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSETLPLVQGSVKGLDDYVQGKITDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKYTYYDGSDQDSLARGFSDGAYTKARLFPASSNFATVEKKYKDDIFTTPAGSGVAVLGFNLDRQSYKH
TAKKSDAEKTATKKAILNKDFRQAITFALNRENYSAQVNGKEFAKPAIRNTYVAPAFVQVDGKDFGNVVADKLTTYGDQW
KGINLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQNSTNFVSRMQSLKQTVEDTLGKDNVVLDLQMMDS
DEVLNITLNVPSAADADWDLQGMVGWNPDYDDPSTYLDTLQPASEDQTKVYLGFAGGVDNPSAKAVGLDEFAKLLDDANN
ETQDVVKRYEKYAVAQAWLTDSAIVIPTMSSTGAATVVSKVVPFSEPSSQTGNKGSTYLKYVEVQDEPVTKKQYDEALKK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=909459 SM121_RS00045 WP_155127073.1 9653..11638(-) (amiA3) [Streptococcus dentalis strain S1]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTAGCTGCATGTTCTAGTTCAAA
TACTAGCAAAGCAAGCTCAGGCGAAGACAAAAACTATGGTTATGTCTACACTTCAGATCCAACAACTTTGGACTATACAA
TTTCTTCTAAAGCTGCTACCCATGACATCACTACAAATGTGGTAGACGGTTTGTTAGAAAATGATAAATACGGTAACCTT
GTACCTTCACTTGCGGAAGACTGGTCTGTTTCTAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATG
GTATGATGCGGATGGTGAAGAACACGGCGAAGTGACTGCCAAAGACTTCGTGACTGGTTTGAAACACGCTGCTGATAAAA
AATCGGAAACTCTTCCACTCGTTCAAGGTTCTGTCAAAGGATTGGATGATTATGTCCAAGGAAAAATCACAGACTTCAGC
CAAGTTGGTGTCAAAGCGGTTGATGATTACACACTTCAATACACATTGAACAAACCTGAAACTTTCTGGAACTCTAAAAC
GACTAACGGAATTTTGTTCCCAATAAGCACAGAGTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AGTCAATCCTTGCAAACGGACCTTTCCTTCTTAAATCAATCACTTCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAACGTTCACCTGAAAGAAGTAAAATATACTTATTACGATGGATCAGACCAAGATTCATTGGCACG
TGGATTCTCTGATGGTGCTTATACAAAAGCTCGCCTTTTCCCTGCAAGTTCAAACTTTGCAACTGTAGAGAAAAAATATA
AAGACGATATCTTTACTACACCAGCAGGATCAGGTGTAGCAGTTCTTGGCTTTAACCTTGATCGTCAATCTTACAAACAC
ACTGCTAAAAAATCAGATGCTGAAAAGACTGCGACTAAGAAAGCAATTTTGAACAAAGATTTCCGTCAGGCCATCACTTT
TGCCTTGAACCGTGAAAACTACTCAGCACAAGTCAATGGTAAAGAATTTGCTAAACCAGCTATCCGTAATACATATGTTG
CACCTGCATTCGTACAAGTAGATGGAAAAGACTTCGGAAATGTAGTTGCAGATAAGTTGACTACTTATGGAGACCAATGG
AAGGGTATCAACCTTGCAGATGGTCAAGATGGTCTTTATAACAAGGATAAAGCGAAAGCGCAACTTGAAAAAGCCAAAGC
TGAACTTCAAAAAGATGGTGTTCAATTCCCAATTCATATTGATGTACCGGTAGCACAAAATTCTACAAACTTTGTTTCAC
GGATGCAATCTCTGAAACAAACGGTAGAAGATACTCTTGGTAAAGACAATGTCGTTCTTGATCTTCAAATGATGGACTCA
GACGAAGTGTTGAATATTACTTTGAATGTGCCATCAGCTGCAGACGCAGACTGGGATCTTCAAGGAATGGTAGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTTGATACTCTTCAACCAGCTTCTGAGGACCAAACAAAAGTTTACCTTGGTT
TTGCAGGTGGTGTAGATAACCCATCAGCAAAAGCTGTAGGTTTGGATGAGTTTGCAAAACTTCTTGACGATGCAAACAAC
GAAACACAAGATGTTGTGAAACGTTATGAAAAATACGCAGTAGCTCAAGCTTGGTTGACAGATAGTGCGATTGTTATTCC
AACGATGTCAAGTACAGGTGCTGCAACAGTTGTTTCTAAGGTAGTTCCATTCTCTGAACCATCATCACAAACAGGTAACA
AAGGTTCAACATACTTGAAATACGTTGAAGTTCAAGATGAGCCGGTTACTAAGAAACAATACGATGAAGCCCTTAAGAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.735

100

0.59
  amiA3 Streptococcus thermophilus LMG 18311

58.283

100

0.585
  amiA Streptococcus salivarius strain HSISS4

58.157

100

0.582