Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SM121_RS00030 Genome accession   NZ_CP139418
Coordinates   6075..7142 (-) Length   355 a.a.
NCBI ID   WP_003004369.1    Uniprot ID   V8B9G0
Organism   Streptococcus dentalis strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075..12142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS00025 (SM121_00025) amiF 5138..6064 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM121_RS00030 (SM121_00030) amiE 6075..7142 (-) 1068 WP_003004369.1 ABC transporter ATP-binding protein Regulator
  SM121_RS00035 (SM121_00035) amiD 7154..8080 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SM121_RS00040 (SM121_00040) amiC 8080..9579 (-) 1500 WP_003013994.1 ABC transporter permease Regulator
  SM121_RS00045 (SM121_00045) amiA3 9653..11638 (-) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39470.06 Da        Isoelectric Point: 4.6328

>NTDB_id=909456 SM121_RS00030 WP_003004369.1 6075..7142(-) (amiE) [Streptococcus dentalis strain S1]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=909456 SM121_RS00030 WP_003004369.1 6075..7142(-) (amiE) [Streptococcus dentalis strain S1]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTACTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGTGGAAGGTGAAGTTCTTGCCTTGGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACATTCACTGGAATGTTAGAAGATAACGGCCGTATTGCCCAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGATCAAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAACACAATTGGTTCACAAATTACAGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCCA
AAGAAATGGCTTTGGACTATATGGAGAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCCTTGGCCTGTCGTCCAGATATCTTAATCTGTGACGAACCAAC
AACAGCCCTTGACGTAACCATTCAAGCGCAAATCATTGATTTATTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGCGAAATTGTTGAG
TTTGGGAAAGTAGAAGAAATTTTCTACGATCCAAAACATCCATATACATGGAGCTTGCTTTCAAGCTTGCCTCAGTTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGGACTCCGCCATCATTGTATGCTCCAATCAAAGGAGATGCCTTCGCAC
TTCGTTCAGACTATGCAATGCAGATTGATTTTGAAGAAGAGGCACCTGCTTTCAAAGTAACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCACATTACTGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8B9G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.286

99.437

0.828
  amiE Streptococcus thermophilus LMG 18311

82.436

99.437

0.82
  amiE Streptococcus thermophilus LMD-9

82.436

99.437

0.82
  oppD Streptococcus mutans UA159

57.391

97.183

0.558