Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SM121_RS00040 Genome accession   NZ_CP139418
Coordinates   8080..9579 (-) Length   499 a.a.
NCBI ID   WP_003013994.1    Uniprot ID   A0A6A8V797
Organism   Streptococcus dentalis strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080..14579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS00025 (SM121_00025) amiF 5138..6064 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM121_RS00030 (SM121_00030) amiE 6075..7142 (-) 1068 WP_003004369.1 ABC transporter ATP-binding protein Regulator
  SM121_RS00035 (SM121_00035) amiD 7154..8080 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SM121_RS00040 (SM121_00040) amiC 8080..9579 (-) 1500 WP_003013994.1 ABC transporter permease Regulator
  SM121_RS00045 (SM121_00045) amiA3 9653..11638 (-) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator
  SM121_RS00050 (SM121_00050) - 11844..13085 (+) 1242 WP_320910915.1 serine hydrolase -
  SM121_RS00055 (SM121_00055) sufB 13144..14556 (-) 1413 WP_320910916.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55979.00 Da        Isoelectric Point: 10.0791

>NTDB_id=909458 SM121_RS00040 WP_003013994.1 8080..9579(-) (amiC) [Streptococcus dentalis strain S1]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
KEDSSVTVDATTANEKIYKEYIKKLGHGWQLKRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKDSWFDSISTAT
LTFMMSLPTIALVYIVRLAGSFFGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGSIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=909458 SM121_RS00040 WP_003013994.1 8080..9579(-) (amiC) [Streptococcus dentalis strain S1]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAAAATGACCCTAACTACAATAAAGTAGCGAAGACAAAGGATTCGAAGA
TCAACTACGAAAATACTGTCTACGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTGCAACAAAAAGCAAGT
AAAGAAGATTCTTCTGTAACAGTTGATGCGACTACTGCTAATGAAAAGATCTATAAGGAATACATTAAAAAATTAGGTCA
TGGTTGGCAGTTGAAACGTTTCCCAGAAAGCAAGTCTTTCTATGCGGTGCGTGAAATTCCGGTTTTTGAACGTGTCATTA
GTTTCTATGCGAATTTGATTCAATTTGATCATCCAGGTTGGGTGAAAGATGCCTCAAATCCAAACCTCAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGTTGGTCTGTTGTAGGTTCTGGTACGAAGCACAAATACCTCTTGTACTTTAATGG
TCAATTCCCATATGTACACCAAAACTTTGTGACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTTATTACCCAAGGACAAGGAACAACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCAATC
GATATCTACTCACGTACCTACAAATCACCAAGTAAGGCAGACTCACAAGATATCAGTCGATTTGGTAAAGGGGACGCTTA
TACAGCAACGTTGAGCAACTATGAGAATCCATCCATGATTGCATCTTCTTCAATCATTGGTTTGATTGGTATTGCGATTG
CTTACTTGATTGCGATCCCATTAGGATCTTACATGGCTCTGTTCAAGGACTCATGGTTTGATAGCATCTCAACAGCAACC
TTGACATTTATGATGTCTCTTCCAACTATTGCCCTTGTTTACATTGTGCGTCTAGCAGGTTCATTCTTTGGACTTCCAGA
CTCATTTCCAGTACTTGGAGCACAGGATTGGCGTTCATATGTATTGCCTTCTCTGATTCTTGGCTTGTTGAGTGCTCCAT
TTATCGCAGTTTGGATTCGTCGTTACATGATCGATATCCACTCGCAAGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCATTGGTATCTGGTATTCCAGGTTCTATTAT
TGGAGTTATCTCAGGTGCGACACTTACTGAAACGGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.142

100

0.711
  amiC Streptococcus thermophilus LMD-9

70.942

100

0.709
  amiC Streptococcus thermophilus LMG 18311

70.942

100

0.709