Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM911_RS25090 Genome accession   NZ_CP139414
Coordinates   5255730..5257250 (+) Length   506 a.a.
NCBI ID   WP_063445773.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain C272187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5250730..5262250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM911_RS25070 (SM911_25070) - 5252287..5253216 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  SM911_RS25075 (SM911_25075) ilvM 5253236..5253493 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  SM911_RS25080 (SM911_25080) ilvG 5253490..5255136 (-) 1647 WP_015368898.1 acetolactate synthase 2 catalytic subunit -
  SM911_RS25085 (SM911_25085) ilvL 5255277..5255375 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SM911_RS25090 (SM911_25090) comM 5255730..5257250 (+) 1521 WP_063445773.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM911_RS25095 (SM911_25095) - 5257274..5257612 (-) 339 WP_015368901.1 DUF413 domain-containing protein -
  SM911_RS25100 (SM911_25100) hdfR 5257731..5258552 (+) 822 WP_015703960.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55082.38 Da        Isoelectric Point: 7.3770

>NTDB_id=909420 SM911_RS25090 WP_063445773.1 5255730..5257250(+) (comM) [Klebsiella aerogenes strain C272187]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKVGRQIVVAGDNAEEVGLINGNECLIAGHL
QEVCAFLEGKHTLQPPTGEITAVEDDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSATIRLRVFAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909420 SM911_RS25090 WP_063445773.1 5255730..5257250(+) (comM) [Klebsiella aerogenes strain C272187]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCGCTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTCCCTGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACCATAAACCTTGCCCCAGCCGATCTGCCGAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCCCCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCTATGGAAGCGATAAAAGTCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTAACGGCAATGAGTGCCTTATAGCAGGGCACCTG
CAGGAAGTCTGTGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGACTGGTGAAATAACTGCGGTAGAGGACGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCACAATTTAC
TCTTGATGGGTCCACCGGGTACAGGGAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCACTAAGCAACCAG
GAAGCGCTGGAAAGCGCGGCTATCCTCAGCCTCGTCAATGCTCATTACGTTACGCGTCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCACAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGCTCAATCCCTGCCCCGGGGGAGATCTCCCTGGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAGCGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGACATTACCAGGGTCAGCATAATCGGGCCACACCGGAACAGACCCTGCGCTACCTGGGCCGATTGTCAGGGC
CATTTCTCGACCGCTTCGATCTCTCGCTTGAGATTCCACTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCACCATTCGTCTACGGGTATTCGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTTAATGCACA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATC
GAACGTCATCATTTGCAGGAGGCGTTAAGCTACCGGGCTATCGACCGTATGTTAAATCACCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.079

100

0.601
  comM Haemophilus influenzae Rd KW20

59.216

100

0.597
  comM Vibrio campbellii strain DS40M4

59.604

99.802

0.595
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

49.799

98.419

0.49
  comM Legionella pneumophila strain ERS1305867

49.799

98.419

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443