Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM905_RS24050 Genome accession   NZ_CP139404
Coordinates   5079746..5081266 (+) Length   506 a.a.
NCBI ID   WP_047045661.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain C242078     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5074746..5086266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM905_RS24030 (SM905_24030) - 5076303..5077232 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  SM905_RS24035 (SM905_24035) ilvM 5077252..5077509 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  SM905_RS24040 (SM905_24040) ilvG 5077506..5079152 (-) 1647 WP_049056423.1 acetolactate synthase 2 catalytic subunit -
  SM905_RS24045 (SM905_24045) ilvL 5079293..5079391 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SM905_RS24050 (SM905_24050) comM 5079746..5081266 (+) 1521 WP_047045661.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM905_RS24055 (SM905_24055) - 5081290..5081628 (-) 339 WP_045362345.1 DUF413 domain-containing protein -
  SM905_RS24060 (SM905_24060) hdfR 5081747..5082568 (+) 822 WP_045395539.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54890.17 Da        Isoelectric Point: 7.6309

>NTDB_id=909357 SM905_RS24050 WP_047045661.1 5079746..5081266(+) (comM) [Klebsiella aerogenes strain C242078]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKAGRKIIVAGDNAEEVGLIGGNECLIAGHL
QEVCAFLEGKHTLQPPAGEIATDDNDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLTNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGGGE
ERSATIRLRVLAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909357 SM905_RS24050 WP_047045661.1 5079746..5081266(+) (comM) [Klebsiella aerogenes strain C242078]
ATGTCACTCGCGATTGTCTATACCCGCGCGGCGCTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTCCCCGGTTTGACGATGGTCGGTCTGCCGGAAACCACCGTAAAGGAAGCCCGCGATCGGGTGCGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCAGCGAAGAAGATAACCATCAATCTCGCACCCGCCGATCTGCCCAAAGAAGGAGGGAGA
TATGATTTACCTATTGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCACCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTAGCCCTTACAGGCGCGTTACGCGGCGTTCCAGGGGCTATATCCAGCGCTATGGAGGCAATAAAAGCCGGGA
GGAAGATCATCGTTGCCGGAGATAATGCCGAAGAGGTCGGTTTGATTGGCGGCAATGAGTGCCTTATAGCCGGACACCTG
CAGGAAGTTTGCGCGTTTCTGGAGGGGAAACATACTCTGCAACCGCCAGCTGGCGAAATCGCGACAGACGACAATGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCACAATTTGC
TCTTGATGGGTCCGCCGGGGACAGGAAAGACGATGCTCGCCAGCCGTTTACCGGGGCTTTTACCGCCGCTAACCAACCAG
GAAGCGCTGGAAAGCGCGGCTATTCTCAGCCTCGTCAATGCTCATTACGTCACGCGCCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCATAGCGCTTCGCTAGCGGCGATGGTCGGCGGCGGCTCAATCCCGGCCCCTGGAGAGATCTCCCTTGCAC
ATAACGGTATTCTGTTTCTTGATGAACTACCCGAATTCGAACGTCGGGTTCTGGATGCACTACGAGAGCCCATCGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGATTATCCCGCAAGATTTCAGCTGATTGCCGCCATGAACCCCAG
CCCAACAGGACATTATCAGGGTCAGCATAATCGGGCCACGCCGGAACAGACCCTACGCTACCTGGGCCGATTATCAGGGC
CATTTCTCGACCGCTTCGATCTTTCGCTTGAAATTCCGCTCCCTCCGCCGGGCGTATTAAGCCGGGGTGGCGGCGGCGAA
GAGCGAAGCGCCACCATCCGATTACGGGTATTAGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTGAACGCGCA
ACTGGATAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTGTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATT
GAACGTCATCATTTGCAGGAGGCGCTAAGCTACCGGGCTATCGACCGCATGTTAAATCACCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.608

100

0.601
  comM Vibrio cholerae strain A1552

59.881

100

0.599
  comM Vibrio campbellii strain DS40M4

59.406

99.802

0.593
  comM Glaesserella parasuis strain SC1401

59.055

100

0.593
  comM Legionella pneumophila str. Paris

50.201

98.419

0.494
  comM Legionella pneumophila strain ERS1305867

50.201

98.419

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.449