Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM913_RS24290 Genome accession   NZ_CP139400
Coordinates   5115519..5117039 (+) Length   506 a.a.
NCBI ID   WP_126338604.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain C222139     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5110519..5122039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM913_RS24270 (SM913_24270) - 5112078..5113007 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  SM913_RS24275 (SM913_24275) ilvM 5113027..5113284 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  SM913_RS24280 (SM913_24280) ilvG 5113281..5114927 (-) 1647 WP_015368898.1 acetolactate synthase 2 catalytic subunit -
  SM913_RS24285 (SM913_24285) ilvL 5115068..5115166 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SM913_RS24290 (SM913_24290) comM 5115519..5117039 (+) 1521 WP_126338604.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM913_RS24295 (SM913_24295) - 5117064..5117402 (-) 339 WP_015368901.1 DUF413 domain-containing protein -
  SM913_RS24300 (SM913_24300) hdfR 5117521..5118342 (+) 822 WP_015368902.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55096.41 Da        Isoelectric Point: 7.3770

>NTDB_id=909336 SM913_RS24290 WP_126338604.1 5115519..5117039(+) (comM) [Klebsiella aerogenes strain C222139]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKVGRQIVVAGDNAEEVGLINGNECLIAGHL
QEVCAFLEGKHTLQPPTGEITAVEDDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLINAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSATIRLRVFAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909336 SM913_RS24290 WP_126338604.1 5115519..5117039(+) (comM) [Klebsiella aerogenes strain C222139]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCGCTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTCCCTGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACCATAAACCTTGCCCCAGCCGATCTGCCGAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCCCCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCTATGGAAGCGATAAAAGTCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTAACGGCAATGAGTGCCTTATAGCAGGGCACCTG
CAGGAAGTCTGTGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGACTGGTGAAATAACTGCGGTAGAGGACGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCACAATTTAC
TCTTGATGGGTCCACCGGGTACAGGGAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCACTAAGCAACCAG
GAAGCGCTGGAAAGCGCGGCTATCCTCAGCCTCATCAATGCTCATTACGTTACGCGTCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCACAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGCTCAATCCCTGCCCCGGGGGAGATCTCCCTGGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAGCGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGACATTACCAGGGTCAGCATAATCGGGCCACACCGGAACAGACCCTGCGCTACCTGGGCCGATTGTCAGGGC
CATTTCTCGACCGCTTCGATCTCTCGCTTGAGATTCCACTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCACCATTCGTCTACGGGTATTCGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTTAATGCACA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTGT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATC
GAACGTCATCATTTACAGGAGGCGTTAAGCTACCGGGCTATCGACCGTATGTTAAATCACCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.079

100

0.601
  comM Haemophilus influenzae Rd KW20

59.02

100

0.595
  comM Vibrio campbellii strain DS40M4

59.604

99.802

0.595
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Legionella pneumophila str. Paris

49.799

98.419

0.49
  comM Legionella pneumophila strain ERS1305867

49.799

98.419

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443