Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM908_RS24335 Genome accession   NZ_CP139379
Coordinates   5084347..5085867 (+) Length   506 a.a.
NCBI ID   WP_015703961.1    Uniprot ID   A0A0H3FM20
Organism   Klebsiella aerogenes strain C71872     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5079347..5090867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM908_RS24315 (SM908_24315) - 5080904..5081833 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  SM908_RS24320 (SM908_24320) ilvM 5081853..5082110 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  SM908_RS24325 (SM908_24325) ilvG 5082107..5083753 (-) 1647 WP_048231489.1 acetolactate synthase 2 catalytic subunit -
  SM908_RS24330 (SM908_24330) ilvL 5083894..5083992 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SM908_RS24335 (SM908_24335) comM 5084347..5085867 (+) 1521 WP_015703961.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM908_RS24340 (SM908_24340) - 5085891..5086229 (-) 339 WP_015368901.1 DUF413 domain-containing protein -
  SM908_RS24345 (SM908_24345) hdfR 5086348..5087169 (+) 822 WP_015703960.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55040.30 Da        Isoelectric Point: 7.3770

>NTDB_id=909209 SM908_RS24335 WP_015703961.1 5084347..5085867(+) (comM) [Klebsiella aerogenes strain C71872]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKVGRQIVVAGDNAEEVGLINGNECLIAGHL
QEVCAFLEGKHTLQPPTGEITAGEDDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSATIRLRVFAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEAISYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909209 SM908_RS24335 WP_015703961.1 5084347..5085867(+) (comM) [Klebsiella aerogenes strain C71872]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCGCTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTCCCTGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACCATAAACCTTGCCCCAGCCGATCTGCCGAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCCCCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCTATGGAAGCGATAAAAGTCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTAACGGCAATGAGTGCCTTATAGCAGGGCACCTG
CAGGAAGTCTGTGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGACTGGTGAAATAACTGCGGGAGAGGACGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCATAATTTAC
TTTTGATGGGTCCACCGGGTACAGGAAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCACTAAGCAACCAG
GAAGCGCTGGAAAGTGCGGCTATCCTCAGCCTCGTCAATGCTCATTACGTTACGCGTCAGTGGCGTCGGCGGCCTTTTCG
TGCCCCTCACCACAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGCTCAATCCCTGCCCCGGGGGAGATCTCCCTGGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAGCGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGACATTACCAGGGTCAGCATAATCGGGCCACACCGGAACAGACCCTGCGCTACCTGGGCCGATTGTCAGGGC
CATTTCTCGACCGCTTCGATCTCTCGCTTGAGATTCCACTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCACCATTCGTCTACGGGTATTCGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTTAATGCACA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTGT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATC
GAACGTCATCATTTGCAGGAGGCGATAAGCTACCGGGCTATCGACCGTATGTTAAATCACCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3FM20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.881

100

0.599
  comM Vibrio campbellii strain DS40M4

59.406

99.802

0.593
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.071

100

0.583
  comM Legionella pneumophila str. Paris

49.598

98.419

0.488
  comM Legionella pneumophila strain ERS1305867

49.598

98.419

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.445