Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM790_RS24520 Genome accession   NZ_CP139377
Coordinates   5099347..5100867 (+) Length   506 a.a.
NCBI ID   WP_320904909.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain C62024     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5094347..5105867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM790_RS24500 (SM790_24500) - 5095904..5096833 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  SM790_RS24505 (SM790_24505) ilvM 5096853..5097110 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  SM790_RS24510 (SM790_24510) ilvG 5097107..5098753 (-) 1647 WP_064737194.1 acetolactate synthase 2 catalytic subunit -
  SM790_RS24515 (SM790_24515) ilvL 5098894..5098992 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SM790_RS24520 (SM790_24520) comM 5099347..5100867 (+) 1521 WP_320904909.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM790_RS24525 (SM790_24525) - 5100891..5101229 (-) 339 WP_045362345.1 DUF413 domain-containing protein -
  SM790_RS24530 (SM790_24530) hdfR 5101348..5102169 (+) 822 WP_045378651.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54909.12 Da        Isoelectric Point: 7.3770

>NTDB_id=909188 SM790_RS24520 WP_320904909.1 5099347..5100867(+) (comM) [Klebsiella aerogenes strain C62024]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKAGRQIVVAGDNAEEVGLIGGNECLTAGHL
QEVCAFLEGKHTLQPPAGEITAGDEDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVSE
ERSATIRLRVLAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909188 SM790_RS24520 WP_320904909.1 5099347..5100867(+) (comM) [Klebsiella aerogenes strain C62024]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCACTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTACCCGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACTATAAACCTTGCGCCAGCCGATCTGCCAAAAGAGGGTGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCACCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTGGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCCATGGAAGCGATAAAAGCCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTGGCGGCAATGAGTGCCTCACAGCCGGGCACCTA
CAGGAAGTCTGCGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGGCTGGCGAAATAACGGCGGGAGACGAGGATTA
TGACGATCTCGGCGATGTCATTGGACAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCGGGCGGTCACAATTTAC
TCTTGATGGGTCCACCGGGTACAGGAAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCGCTAAGCAACCAG
GAAGCGCTGGAAAGCGCGGCTATCCTCAGCCTCGTCAATGCTCATTACGTCACGCGTCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCATAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGTTCAATCCCTGCCCCTGGGGAGATCTCCCTTGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAACGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGGCATTACCAGGGTCAGCACAATCGGGCCACACCGGAACAGACCCTACGCTACCTGGGCCGATTATCAGGGC
CATTTCTCGACCGATTCGATCTCTCGCTTGAAATTCCGCTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTAGCGAA
GAGCGAAGCGCCACTATTCGTCTACGGGTATTAGCGGCGCGTGACAGACAGCTCGCACGGCAGAATAAACTTAATGCGCA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATT
GAACGTCATCATTTGCAGGAGGCGCTAAGCTACCGGGCTATCGACCGTATGTTAAATCATCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.079

100

0.601
  comM Haemophilus influenzae Rd KW20

59.216

100

0.597
  comM Vibrio campbellii strain DS40M4

59.802

99.802

0.597
  comM Glaesserella parasuis strain SC1401

58.824

100

0.593
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.445