Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM130_RS19315 Genome accession   NZ_CP139348
Coordinates   4163504..4165000 (+) Length   498 a.a.
NCBI ID   WP_102826287.1    Uniprot ID   A0A2N8RY67
Organism   Stutzerimonas stutzeri strain KC     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4158504..4170000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM130_RS19285 (SM130_19285) sutA 4158805..4159134 (-) 330 WP_102826282.1 transcriptional regulator SutA -
  SM130_RS19290 (SM130_19290) - 4159213..4159638 (-) 426 WP_102826283.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SM130_RS19295 (SM130_19295) - 4159742..4160992 (-) 1251 WP_102826284.1 ammonium transporter -
  SM130_RS19300 (SM130_19300) - 4161117..4162433 (-) 1317 WP_102826285.1 ammonium transporter -
  SM130_RS19305 (SM130_19305) glnK 4162472..4162810 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  SM130_RS19310 (SM130_19310) - 4163208..4163468 (+) 261 WP_102826286.1 accessory factor UbiK family protein -
  SM130_RS19315 (SM130_19315) comM 4163504..4165000 (+) 1497 WP_102826287.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM130_RS19320 (SM130_19320) betT 4165131..4167104 (+) 1974 WP_102826288.1 choline BCCT transporter BetT -
  SM130_RS19325 (SM130_19325) - 4167142..4168779 (-) 1638 WP_102826289.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53045.95 Da        Isoelectric Point: 8.1454

>NTDB_id=909050 SM130_RS19315 WP_102826287.1 4163504..4165000(+) (comM) [Stutzerimonas stutzeri strain KC]
MSLAIVHSRAQIGVEAPSVTVEAHLANGLPALALVGLPETAVKESKDRVRSAILTSGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAERLDKLECLGELALSGALRPIQGTLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLQPYVAQGLLRQIQPYPDLAEVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPMES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPDQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAQARQLQLARQGCANAFLDLAGLRSHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAAS
ISRQHLAEALQYRPGNQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=909050 SM130_RS19315 WP_102826287.1 4163504..4165000(+) (comM) [Stutzerimonas stutzeri strain KC]
ATGTCCCTGGCCATAGTTCATAGCCGCGCTCAGATCGGCGTCGAAGCGCCATCGGTGACCGTTGAAGCCCACCTGGCCAA
CGGTCTGCCGGCTCTGGCGCTGGTCGGCCTGCCGGAAACCGCAGTGAAGGAGAGCAAGGACCGCGTACGCAGCGCCATCC
TCACCTCCGGCTTCGACTTTCCGCCCCGCCGTATCACGCTCAATCTCGCACCGGCCGATCTGCCCAAGGATGGCGGCCGT
TTCGACCTGGCCATCGCTCTGGGCATTCTCGCCGCCAGCGGCCAACTGCCCGCCGAGCGTCTGGACAAGCTGGAATGCCT
GGGCGAACTGGCGCTGTCCGGCGCGTTGCGCCCGATCCAGGGCACGTTGCCGGCCGCTCTTGCCGCTCGTGCTGCCGGCC
GTGCGTTGCTGGTGCCACGAGCCAACGCCGAGGAAGCCAGCCTCGCGTCTGGACTAACGGTCTATGCCGCCGAGCATTTG
CTTGAGGTCGCCGCGCACTTCAACGGCGTCACGCCGCTGCAACCCTATGTGGCCCAGGGCCTGCTGCGACAGATCCAGCC
CTACCCCGACCTGGCTGAAGTGCAAGGCCAGCAGGCCGCCAAACGCGGGCTGCTGATCGCCGCGGCCGGGGCGCACAACC
TGCTTTTTTCGGGCCCACCAGGGACCGGCAAAACGCTGCTGGCCAGTCGCCTGCCAGGTCTCTTGCCGCCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCACTCGGTGGCCAGCCACAGTCCTCTCGAACATTGGCCGCAGCGGCCCTTTCG
GCAGCCCCATCACAGCGCATCGGGGCCGGCACTGGTCGGTGGTGGCAGCCGCCCGCAGCCAGGCGAGATCACTCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTACTCGAAGTCCTGCGCGAGCCCATGGAGTCG
GGTCATATCGTCATCGCCCGGGCTCGCGACAAGGTGCGCTTTCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCGTGCGGCTATCTCGGTGACCCCAACGGCCGCTGCCGCTGCACGCCAGACCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCCACGGCGCTCAATGCGCCACCGCAAACC
GGGCAGAGCAGCGCCGTGCTGGCCGCGCAGGTGGCCCAGGCCAGGCAGCTGCAACTGGCCCGCCAAGGCTGCGCCAATGC
ATTCCTCGACCTCGCCGGTCTGCGCAGCCATTGTCAGCTGACGGCCGAGGACCAGGCCTGGCTGGAACGCGCCTGCGAGC
GGCTGGCGCTGTCGCTGCGCGCAGCGCACCGTTTGCTCAAGGTCGCACGCACCCTTGCTGACCTGGAGCAGGCCGCGAGC
ATCAGTCGCCAGCACCTCGCCGAAGCGCTGCAATACCGGCCCGGCAACCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8RY67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

99.398

0.554
  comM Glaesserella parasuis strain SC1401

54.98

100

0.554
  comM Vibrio cholerae strain A1552

55.152

99.398

0.548
  comM Haemophilus influenzae Rd KW20

54.092

100

0.544
  comM Legionella pneumophila str. Paris

50.198

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466