Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABRP08_RS08270 Genome accession   NZ_CP158353
Coordinates   1734696..1735325 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 914033     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1729696..1740325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP08_RS08250 (ABRP08_08245) ycbZ 1730097..1731857 (-) 1761 WP_000156518.1 Lon protease family protein -
  ABRP08_RS08255 (ABRP08_08250) matP 1732043..1732495 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABRP08_RS08260 (ABRP08_08255) ompA 1732571..1733611 (-) 1041 WP_000750416.1 porin OmpA -
  ABRP08_RS08265 (ABRP08_08260) sulA 1733968..1734477 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABRP08_RS08270 (ABRP08_08265) sxy/tfoX 1734696..1735325 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABRP08_RS08275 (ABRP08_08270) yccS 1735288..1737450 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ABRP08_RS08280 (ABRP08_08275) yccF 1737460..1737906 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ABRP08_RS08285 (ABRP08_08280) helD 1738029..1740083 (+) 2055 WP_053263464.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=909050 ABRP08_RS08270 WP_000839153.1 1734696..1735325(+) (sxy/tfoX) [Escherichia coli strain 914033]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=909050 ABRP08_RS08270 WP_000839153.1 1734696..1735325(+) (sxy/tfoX) [Escherichia coli strain 914033]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1