Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SM130_RS19000 Genome accession   NZ_CP139348
Coordinates   4097305..4099455 (-) Length   716 a.a.
NCBI ID   WP_102826233.1    Uniprot ID   A0A2N8RY15
Organism   Stutzerimonas stutzeri strain KC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4092305..4104455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM130_RS18985 (SM130_18985) - 4094060..4095616 (-) 1557 WP_102826230.1 AAA family ATPase -
  SM130_RS18990 (SM130_18990) aroB 4095627..4096730 (-) 1104 WP_102826231.1 3-dehydroquinate synthase -
  SM130_RS18995 (SM130_18995) aroK 4096754..4097299 (-) 546 WP_102826232.1 shikimate kinase AroK -
  SM130_RS19000 (SM130_19000) pilQ 4097305..4099455 (-) 2151 WP_102826233.1 type IV pilus secretin PilQ Machinery gene
  SM130_RS19005 (SM130_19005) pilP 4099510..4100037 (-) 528 WP_102826234.1 type 4a pilus biogenesis lipoprotein PilP -
  SM130_RS19010 (SM130_19010) pilO 4100034..4100657 (-) 624 WP_102826235.1 type 4a pilus biogenesis protein PilO -
  SM130_RS19015 (SM130_19015) pilN 4100654..4101226 (-) 573 WP_102826236.1 type 4a pilus biogenesis protein PilN -
  SM130_RS19020 (SM130_19020) comM 4101226..4102290 (-) 1065 WP_102826237.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 77001.06 Da        Isoelectric Point: 4.8081

>NTDB_id=909047 SM130_RS19000 WP_102826233.1 4097305..4099455(-) (pilQ) [Stutzerimonas stutzeri strain KC]
MNTTLSRLGVALLAAFISPALLAAKLNTLDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIAVDLPGVSNNLGTKNRE
LGIGNARSVTVVEAQGRTRLIINLTSLVPYSTRVDGNNLFVVLGESAGVGSSAAVSAATAVSSVPSAPVKSSLASKAIEN
IDFRRGDDGAGNIVISLSDPSISPTIEEQGGKIRVTFDKTQLPESLRVRLDVQDFATPVRFVDSTAQAGKASIAIEPVGR
YDYLAYQTDDKLTISVKPLTEDEADKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTNNAAS
AEDRGSIAVDDRTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGNLWAGDKWNAWGKNG
QLGVADDPDASGSPGDDGYRPSRQVGRFPGIPEVPMNSPFVDMGAIGANSGIGLGFITNNAILDLQLSAMEKTGNGEVVS
QPKVVTADKETAKILKGSEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDEPDFSQAASTGGVPAIR
KNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFLGDLPFVGRLFRRDLVQDRKSELLVFITPRIMNNQAIQVSR

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=909047 SM130_RS19000 WP_102826233.1 4097305..4099455(-) (pilQ) [Stutzerimonas stutzeri strain KC]
ATGAATACTACTCTTTCACGTCTAGGCGTTGCTCTGCTGGCAGCGTTCATCTCGCCCGCACTGTTGGCGGCCAAGCTTAA
TACTCTTGATGTTGCTGCGCTGCCTGGCGATCGTGTCGAGCTGAAACTCGCTTTTGACGAACCTGTTGCGTCGCCGCGTG
GATACACGCTGGACCAGCCCGCACGCATCGCGGTTGATCTTCCTGGTGTCTCGAACAATCTTGGGACTAAGAATCGTGAG
CTTGGAATTGGCAATGCGCGAAGCGTAACCGTTGTCGAGGCTCAAGGGCGCACACGGCTCATAATCAATTTGACCTCGCT
TGTGCCTTACTCGACGCGGGTAGATGGCAATAATCTCTTTGTGGTGTTGGGCGAGAGTGCTGGAGTTGGTAGTTCTGCTG
CGGTTTCTGCAGCGACTGCAGTTTCATCAGTTCCTTCCGCGCCTGTTAAATCTTCACTGGCTAGTAAGGCTATCGAAAAT
ATCGACTTTCGTCGTGGTGATGACGGTGCTGGAAATATAGTTATCAGCCTGTCCGATCCGTCGATAAGCCCCACCATTGA
AGAGCAGGGTGGCAAGATTCGCGTCACATTCGACAAAACGCAGTTGCCCGAGTCGCTGCGCGTTCGTCTAGATGTTCAGG
ATTTCGCTACACCGGTACGGTTTGTCGACTCCACAGCGCAGGCAGGTAAGGCCAGCATCGCGATCGAGCCGGTAGGGCGT
TATGATTACTTGGCCTATCAGACAGACGACAAGCTGACAATCAGCGTCAAGCCTTTAACCGAGGATGAGGCTGACAAGCG
CAAGGCTGACCGTTTCGCCTATTCGGGCGAAAAACTCTCGCTTAACTTCCAGGATATTGATGTTCGTTCCGTGCTGCAGT
TGATAGCTGACTTCACTGATCTGAACTTAGTAGCCAGTGATACGGTTAGCGGCAACATCACACTGCGGCTACAGAACGTG
CCGTGGGACCAAGCTTTGGATCTGGTGCTGAAGACCAAGGGGCTTGATAAGCGGCAGGTAGGCAATGTGCTCTTAGTCGC
TCCTGCAGACGAGATCGCCGCTCGTGAGCGCCAAGAACTGGAATCGCAGCGACAGATTGCCGAACTCGCCCCGCTGCGTC
GGGAAGTGGTGCAGGTAAATTATGCCAAGGCCGCCGACATTGCCCGGTTGTTTCAATCTGTTACCAATAACGCCGCTTCA
GCAGAGGATCGGGGATCCATCGCGGTAGATGATCGTACGAACAATATTATCGCCTATCAGACGCAGGATCGGCTTGACGA
GCTTCGCCGTATCGTTGCGCAGCTTGATATTCCCGTTAGACAGGTGATGATCGAGGCGCGGATCGTAGAAGCCAACGTCG
ACTACGACAAAAGCCTGGGCGTTCGTTGGGGAGGAAACTTGTGGGCTGGCGATAAATGGAACGCCTGGGGTAAAAATGGG
CAGCTAGGTGTGGCTGATGATCCCGATGCAAGCGGCAGTCCCGGAGACGATGGGTATCGGCCGTCTCGCCAAGTCGGGCG
CTTTCCAGGTATACCTGAGGTGCCTATGAATAGCCCCTTCGTTGATATGGGGGCGATTGGGGCTAATTCAGGTATAGGGT
TAGGGTTCATTACTAACAATGCTATTTTGGATCTTCAGCTCTCTGCAATGGAGAAAACTGGCAACGGTGAAGTAGTGTCG
CAACCAAAAGTTGTGACAGCTGACAAGGAAACCGCGAAAATTTTGAAAGGTTCAGAGGTCCCGTATCAAGAAGCTAGCTC
GAGTGGAGCTACTAGTACCTCTTTCAAGGAGGCAGCTCTTTCGCTGGAGGTCACACCACAGATCACGCCAGACAACCGCA
TCATCATGGAGGTTAAGGTAACTAAGGATGAGCCTGACTTTTCTCAGGCGGCGAGCACTGGCGGTGTGCCTGCCATCCGA
AAAAACGAAGTGAACGCCAAGGTTCTAGTTACTGATGGTGAAACCATCGTCATTGGTGGTGTGTTCTCCAATACACAAAG
CAAGTCGGTGGACAAGGTGCCGTTCCTTGGTGATCTACCATTCGTTGGTCGGCTTTTCCGCCGTGATCTGGTGCAAGATC
GAAAGTCTGAGCTGCTTGTATTCATCACTCCTCGGATCATGAATAATCAGGCGATACAGGTCAGTCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

AMIN domain (AMIN)

(38-123)

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(549-707)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8RY15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.828

100

0.737
  comQ Acinetobacter baylyi ADP1

40.196

99.721

0.401
  pilQ Acinetobacter baumannii D1279779

38.114

100

0.401
  pilQ Acinetobacter baumannii strain A118

38.114

100

0.401