Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SM114_RS16385 Genome accession   NZ_CP139347
Coordinates   3412775..3414295 (+) Length   506 a.a.
NCBI ID   WP_012666553.1    Uniprot ID   -
Organism   Erwinia pyrifoliae strain YKB12327     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3407775..3419295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM114_RS16365 (SM114_16345) - 3409356..3410282 (-) 927 WP_012439952.1 branched-chain amino acid transaminase -
  SM114_RS16370 (SM114_16350) ilvM 3410301..3410558 (-) 258 WP_012666555.1 acetolactate synthase 2 small subunit -
  SM114_RS16375 (SM114_16355) ilvG 3410555..3412201 (-) 1647 WP_012666554.1 acetolactate synthase 2 catalytic subunit -
  SM114_RS16380 (SM114_16360) - 3412342..3412440 (-) 99 WP_104945175.1 IlvGEDA operon leader peptide -
  SM114_RS16385 (SM114_16365) comM 3412775..3414295 (+) 1521 WP_012666553.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SM114_RS16390 (SM114_16370) - 3414330..3414668 (-) 339 WP_012666552.1 DUF413 domain-containing protein -
  SM114_RS16395 (SM114_16375) hdfR 3414789..3415616 (+) 828 WP_012666551.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55191.27 Da        Isoelectric Point: 7.5843

>NTDB_id=909013 SM114_RS16385 WP_012666553.1 3412775..3414295(+) (comM) [Erwinia pyrifoliae strain YKB12327]
MSLSVAYTRAAIGIQAPLVSVEVHLSNGLPALSLVGLPETTVKEARERVRSAILNSGFTFPAKRITVSLAPADLPKEGGR
YDLPIAIAILAASEQVPAEKLIQYEFLGELALTGALRGVQGAIPAALSALDAHRQLILSAENQHDVGLIRHGESLIATHL
LEVCAFLHGKSQLDAAHCEPEEYLPSSGDLNDIIGQQQAKRALEITAAGGHNLLLIGPPGTGKTMLASRFSGLMPPLSDR
EALESASLASLISGSDFRRHWRQRPFRAPHHSASLYALVGGGSLPKPGEISLAHNGVLFLDELPEFERRALDALREPLES
GEISISRARAKITYPARFQLIAAMNPSPTGHYRGPHNRSSPQQTLRYLSRLSGPFIDRFDISLEVPLLPAGMLSAQRGES
ESSQQVRERVLLARERQLARCNKMNATMNNQEIRACCRLTLEDAEWLEQVMTQLGLSVRAWQRILKVARTIADMAGEQCI
GRQHLTEAVSYRAIDRLLVHLQNSLD

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=909013 SM114_RS16385 WP_012666553.1 3412775..3414295(+) (comM) [Erwinia pyrifoliae strain YKB12327]
ATGTCGCTATCAGTTGCTTACACCCGTGCCGCAATTGGCATTCAGGCACCGCTGGTGTCCGTGGAAGTTCACCTCAGTAA
TGGTCTTCCTGCACTATCTCTGGTTGGATTACCGGAAACCACCGTTAAGGAGGCCCGTGAAAGAGTACGCAGCGCCATCC
TCAACAGCGGGTTTACCTTCCCGGCAAAGCGGATAACCGTTAGCCTGGCACCGGCCGACCTGCCTAAAGAAGGGGGCCGA
TATGACTTACCTATCGCTATCGCCATTCTCGCGGCTTCAGAACAGGTTCCAGCAGAAAAACTTATTCAGTATGAATTCCT
GGGTGAATTGGCCCTTACGGGCGCGCTACGTGGCGTACAGGGCGCAATTCCTGCTGCACTGTCGGCGTTGGACGCTCATC
GGCAACTGATTCTCTCAGCAGAAAATCAGCATGATGTCGGGTTGATTCGACATGGGGAGAGCCTGATCGCCACCCATCTC
CTGGAGGTGTGCGCCTTTTTACATGGTAAGTCACAACTGGATGCTGCGCACTGCGAACCAGAGGAATACCTGCCATCCTC
AGGAGATTTGAACGACATCATCGGCCAACAGCAGGCAAAGCGCGCGCTGGAGATCACGGCAGCCGGAGGGCATAACCTGT
TACTTATTGGCCCGCCGGGAACAGGAAAAACGATGCTGGCGTCCAGATTTAGCGGCCTGATGCCGCCTCTGAGCGATCGT
GAAGCGTTAGAGAGCGCCAGCCTGGCCAGCCTGATATCCGGCAGCGATTTTCGGCGTCACTGGCGTCAGAGACCGTTCCG
CGCCCCTCACCATAGCGCATCACTGTATGCGCTGGTGGGTGGCGGGTCACTGCCTAAACCCGGCGAAATCTCGCTGGCTC
ATAACGGGGTACTATTTCTGGATGAGCTGCCCGAGTTTGAACGCCGTGCGCTTGATGCGCTACGTGAACCACTTGAGTCG
GGAGAGATCAGCATTTCGCGAGCCAGAGCAAAAATTACCTATCCGGCACGCTTCCAGCTGATTGCAGCAATGAATCCCAG
CCCCACCGGACATTATCGCGGCCCGCATAATCGCTCATCCCCCCAGCAGACATTACGCTATCTCAGCCGCCTGTCTGGTC
CATTCATCGACCGATTTGATATTTCTCTGGAAGTACCCCTGTTGCCAGCAGGAATGTTGAGCGCCCAACGTGGCGAAAGT
GAGTCCAGCCAACAGGTGCGCGAACGGGTGCTGTTGGCTCGTGAACGGCAGCTGGCGCGCTGCAATAAAATGAATGCGAC
AATGAACAACCAGGAAATCCGGGCTTGCTGTAGACTGACGCTTGAGGATGCAGAATGGCTGGAGCAGGTAATGACCCAAC
TGGGTCTGTCGGTGCGCGCCTGGCAACGCATTCTGAAAGTGGCCCGCACTATCGCGGACATGGCGGGGGAGCAATGCATT
GGTCGGCAGCACCTGACCGAAGCAGTTAGCTACCGGGCTATCGACCGCTTACTTGTCCATTTACAAAATAGTCTGGATTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.402

100

0.626
  comM Glaesserella parasuis strain SC1401

61.297

100

0.617
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

50.803

98.419

0.5
  comM Legionella pneumophila strain ERS1305867

50.803

98.419

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435