Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SOI74_RS08385 Genome accession   NZ_CP139287
Coordinates   1789840..1791327 (-) Length   495 a.a.
NCBI ID   WP_005804030.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 564U     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1784840..1796327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS08355 (SOI74_08355) - 1784891..1785058 (+) 168 WP_075384051.1 hypothetical protein -
  SOI74_RS08360 (SOI74_08360) - 1785097..1785909 (+) 813 WP_017385855.1 TorF family putative porin -
  SOI74_RS08365 (SOI74_08365) - 1785951..1786829 (-) 879 WP_182917679.1 dihydrodipicolinate synthase family protein -
  SOI74_RS08370 (SOI74_08370) - 1786845..1787621 (-) 777 WP_068553261.1 aldolase -
  SOI74_RS08375 (SOI74_08375) mocR 1787733..1789166 (+) 1434 WP_005804027.1 PLP-dependent aminotransferase family protein -
  SOI74_RS08380 (SOI74_08380) yieF 1789191..1789736 (-) 546 WP_005804029.1 NADPH-dependent FMN reductase -
  SOI74_RS08385 (SOI74_08385) comM 1789840..1791327 (-) 1488 WP_005804030.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SOI74_RS08390 (SOI74_08390) - 1791393..1791620 (-) 228 WP_002121136.1 accessory factor UbiK family protein -
  SOI74_RS08395 (SOI74_08395) glnK 1791899..1792237 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  SOI74_RS08400 (SOI74_08400) amtB 1792295..1793689 (+) 1395 WP_005079483.1 ammonium transporter -
  SOI74_RS08405 (SOI74_08405) nrdR 1793813..1794271 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  SOI74_RS08410 (SOI74_08410) ribD 1794287..1795372 (+) 1086 WP_182917678.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54486.57 Da        Isoelectric Point: 7.3646

>NTDB_id=908808 SOI74_RS08385 WP_005804030.1 1789840..1791327(-) (comM) [Acinetobacter pittii strain 564U]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRLVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=908808 SOI74_RS08385 WP_005804030.1 1789840..1791327(-) (comM) [Acinetobacter pittii strain 564U]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCGCCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGTTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCTATTGCTGTAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGCGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCTAGTGTCAGGCACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGTGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGATAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467